Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALX4_chr11_44255440_44315139	0/0	t0061	4492	1	0	0	1	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0062	4492	1	0	1	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0063	4492	1	0	0	0	0	1	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0064	4492	1	0	0	0	0	1	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0065	4489	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0066	4492	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0067	4488	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALYREF_chr17_81882835_81896586	1/1	t0001	303	298	81	55	110	7	43	copy fasta	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	t0002	303	15	0	10	5	0	0	copy fasta	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	t0003	302	8	3	1	1	1	2	copy fasta	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	t0004	292	1	0	0	0	0	1	copy fasta	ALYREF	chr17	81882835	81896586
AMACR_chr5_33981165_34013050	0/0	t0001	2960	120	12	24	73	3	8	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0002	2960	55	7	5	37	1	5	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/1	t0003	2960	50	6	20	4	1	18	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	1/0	t0004	2960	48	16	3	20	0	8	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0005	2960	42	0	11	26	0	5	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0006	2960	37	0	3	32	1	1	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0007	2960	15	13	2	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0008	2960	14	0	0	14	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0009	2960	6	6	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0010	2960	6	5	1	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0011	2960	5	5	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0012	2960	3	3	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0013	2960	3	3	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0014	2960	2	2	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0015	2960	2	2	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0016	2960	2	0	0	0	2	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0017	2960	2	2	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0018	2960	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0019	2960	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0020	2960	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0021	2960	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0022	2960	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0023	2960	1	0	0	1	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0024	2960	1	0	1	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0025	2960	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0026	2960	1	0	0	0	0	1	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0027	2960	1	0	0	1	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0028	2960	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0029	2960	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0030	2960	1	0	0	1	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0031	2960	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0032	2960	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0033	2960	1	0	0	1	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0034	2960	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0035	2960	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0036	2960	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0037	2960	1	0	0	1	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0038	2960	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0039	2960	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050