JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPC3_chrX_133530745_133990594	0/0	t0002	521	10	10	0	0	0	0	copy fasta	GPC3	chrX	133530745	133990594
GPC3_chrX_133530745_133990594	0/0	t0003	526	2	0	1	1	0	0	copy fasta	GPC3	chrX	133530745	133990594
GPC3_chrX_133530745_133990594	0/0	t0004	526	1	0	1	0	0	0	copy fasta	GPC3	chrX	133530745	133990594
GPC3_chrX_133530745_133990594	0/0	t0005	520	1	1	0	0	0	0	copy fasta	GPC3	chrX	133530745	133990594
GPC3_chrX_133530745_133990594	0/0	t0006	524	1	0	0	1	0	0	copy fasta	GPC3	chrX	133530745	133990594
GPC3_chrX_133530745_133990594	0/0	t0007	522	1	1	0	0	0	0	copy fasta	GPC3	chrX	133530745	133990594
GPC3_chrX_133530745_133990594	0/0	t0008	525	1	1	0	0	0	0	copy fasta	GPC3	chrX	133530745	133990594
GPC3_chrX_133530745_133990594	0/0	t0009	521	1	1	0	0	0	0	copy fasta	GPC3	chrX	133530745	133990594
GPC4_chrX_133295103_133420489	1/1	t0001	3289	86	6	14	51	4	9	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0002	3289	83	24	11	30	3	15	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0003	3289	13	2	1	10	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0004	3290	5	5	0	0	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0005	3289	4	4	0	0	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0006	3289	3	1	0	1	0	1	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0007	3290	3	0	0	3	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0008	3289	3	0	2	0	0	1	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0009	3289	2	0	2	0	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0010	3289	2	2	0	0	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0011	3289	2	0	1	0	0	1	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0012	3289	2	0	2	0	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0013	3290	1	0	0	1	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0014	3289	1	0	1	0	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0015	3290	1	1	0	0	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0016	3290	1	0	0	1	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0017	3290	1	1	0	0	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0018	3290	1	1	0	0	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0019	3288	1	0	0	1	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0020	3288	1	0	1	0	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0021	3289	1	0	0	1	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0022	3289	1	1	0	0	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0023	3290	1	0	0	0	0	1	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0024	3299	1	0	0	1	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	t0025	3289	1	0	0	1	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC5_chr13_91393621_92872237	0/0	t0001	1216	25	23	2	0	0	0	copy fasta	GPC5	chr13	91393621	92872237
GPC5_chr13_91393621_92872237	0/0	t0002	1225	13	12	1	0	0	0	copy fasta	GPC5	chr13	91393621	92872237
GPC5_chr13_91393621_92872237	0/0	t0003	1201	3	0	1	0	0	2	copy fasta	GPC5	chr13	91393621	92872237
GPC5_chr13_91393621_92872237	0/0	t0004	1225	1	1	0	0	0	0	copy fasta	GPC5	chr13	91393621	92872237
GPC6_chr13_93221807_94413020	0/0	t0001	5454	11	9	2	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0002	5455	8	2	5	1	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0003	5455	5	1	1	2	0	1	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0004	5455	4	4	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0005	5454	3	2	1	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0006	5455	3	2	1	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0007	5454	3	2	1	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0008	5455	3	1	0	1	1	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0009	5455	2	2	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0010	5454	2	2	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0011	5452	2	2	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0012	5454	2	0	2	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0013	5454	2	2	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020