JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPC6_chr13_93221807_94413020	0/0	t0014	5454	2	1	1	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0015	5454	2	1	0	0	0	1	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0016	5454	2	2	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0017	5454	1	0	0	0	1	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0018	5454	1	1	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0019	5454	1	1	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0020	5454	1	1	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0021	5455	1	0	0	0	0	1	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0022	5455	1	1	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0023	5455	1	1	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0024	5455	1	1	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0025	5455	1	1	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0026	5454	1	1	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0027	5454	1	0	0	0	0	1	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0028	5455	1	0	0	1	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0029	5454	1	1	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0030	5454	1	0	1	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0031	5452	1	1	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0032	5440	1	1	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0033	5455	1	0	0	1	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0034	5455	1	1	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0035	5454	1	1	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	t0036	5454	1	0	1	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPCPD1_chr20_5539439_5616006	0/0	t0001	3414	71	9	9	40	5	8	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0002	3415	69	1	12	47	2	7	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/1	t0003	3415	66	15	10	31	4	5	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0004	3415	54	11	6	28	1	8	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0005	3413	25	4	1	20	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0006	3413	24	13	4	4	1	2	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0007	3414	6	5	1	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0008	3414	5	5	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0009	3414	5	5	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0010	3415	4	2	0	1	0	1	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0011	3414	3	3	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0012	3415	3	0	0	3	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0013	3414	3	1	1	0	1	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0014	3415	2	0	0	2	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0015	3414	2	2	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0016	3414	2	2	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0017	3415	2	0	1	1	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0018	3414	2	2	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0019	3415	2	0	1	1	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0020	3414	2	2	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0021	3415	2	0	2	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0022	3415	2	0	2	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0023	3414	2	0	2	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0024	3415	1	0	0	0	0	1	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0025	3415	1	0	1	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0026	3415	1	0	0	0	0	1	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0027	3414	1	1	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006