JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPCPD1_chr20_5539439_5616006	0/0	t0028	3414	1	1	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0029	3414	1	0	0	1	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0030	3415	1	0	0	0	0	1	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0031	3414	1	0	0	0	0	1	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0032	3415	1	0	0	1	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0033	3415	1	1	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0034	3415	1	0	0	1	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0035	3415	1	0	0	0	0	1	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0036	3415	1	0	0	1	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0037	3414	1	0	1	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0038	3414	1	0	1	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0039	3414	1	0	0	0	0	1	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0040	3415	1	0	0	1	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0041	3414	1	1	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0042	3414	1	1	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0043	3413	1	1	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0044	3414	1	0	0	1	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0045	3413	1	0	0	1	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0046	3413	1	0	1	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0047	3413	1	1	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0048	3415	1	1	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0049	3415	1	0	0	1	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	t0050	3415	1	0	0	0	0	1	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	1/0	t0051	3416	1	0	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPD1L_chr3_32101620_32173709	0/0	t0001	2892	114	47	17	42	1	7	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	1/1	t0002	2892	111	10	27	58	4	10	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0003	2892	52	1	3	38	3	7	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0004	2892	15	5	3	0	0	7	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0005	2892	7	0	4	0	2	1	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0006	2892	6	0	3	0	2	1	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0007	2892	5	5	0	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0008	2892	5	0	0	5	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0009	2892	4	4	0	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0010	2892	4	4	0	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0011	2892	4	4	0	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0012	2892	3	2	1	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0013	2892	2	2	0	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0014	2892	2	0	2	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0015	2892	2	0	2	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0016	2892	2	1	1	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0017	2892	2	0	0	2	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0018	2892	2	0	0	2	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0019	2892	1	1	0	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0020	2892	1	0	0	1	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0021	2892	1	0	1	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0022	2892	1	1	0	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0023	2892	1	0	0	1	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0024	2892	1	0	0	1	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0025	2892	1	0	0	1	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0026	2892	1	0	1	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709