JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPD1L_chr3_32101620_32173709	0/0	t0027	2892	1	0	0	0	1	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0028	2892	1	1	0	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0029	2892	1	0	0	0	1	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0030	2892	1	1	0	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0031	2892	1	0	1	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0032	2892	1	1	0	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0033	2892	1	0	0	1	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0034	2892	1	0	0	1	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0035	2892	1	0	0	1	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	t0036	2892	1	0	0	0	0	1	copy fasta	GPD1L	chr3	32101620	32173709
GPD1_chr12_50099008_50116313	1/1	t0001	1838	374	89	71	170	9	33	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	t0002	1835	12	0	7	5	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	t0003	1838	4	0	0	4	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	t0004	1838	4	4	0	0	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	t0005	1838	2	0	0	0	0	2	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	t0006	1838	2	0	0	2	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	t0007	1838	1	0	0	0	0	1	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	t0008	1838	1	0	0	1	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	t0009	1860	1	0	0	0	0	1	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	t0010	1838	1	1	0	0	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	t0011	1838	1	1	0	0	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	t0012	1838	1	1	0	0	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	t0013	1838	1	0	0	0	0	1	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	t0014	1838	1	0	0	0	1	0	copy fasta	GPD1	chr12	50099008	50116313
GPD2_chr2_156431379_156591403	0/0	t0001	3629	138	22	22	71	4	19	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/1	t0002	3629	32	7	6	12	1	5	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	t0003	3627	18	2	2	9	0	5	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	t0004	3629	11	0	0	11	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	t0005	3629	9	9	0	0	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	t0006	3629	8	3	3	2	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	t0007	3629	7	7	0	0	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	1/0	t0008	3629	5	4	0	0	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	t0009	3629	5	0	5	0	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	t0010	3629	4	0	0	4	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	t0011	3629	3	0	1	0	0	2	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	t0012	3629	3	3	0	0	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	t0013	3629	2	0	0	2	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	t0014	3629	2	0	2	0	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	t0015	3629	1	0	0	1	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	t0016	3629	1	0	1	0	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	t0017	3629	1	0	0	0	0	1	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	t0018	3627	1	0	0	1	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	t0019	3629	1	1	0	0	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	t0020	3629	1	0	0	0	1	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	t0021	3629	1	0	0	1	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPER1_chr7_1083113_1098810	1/0	t0001	1486	152	12	26	89	9	15	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0002	1486	46	4	13	25	0	4	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0003	1484	39	0	2	36	0	1	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0004	1486	33	6	5	21	1	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0005	1486	28	16	3	3	1	5	copy fasta	GPER1	chr7	1083113	1098810