JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPER1_chr7_1083113_1098810	0/0	t0006	1486	24	1	10	10	0	3	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/1	t0007	1486	21	5	6	4	2	3	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0008	1486	17	3	2	7	0	5	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0009	1486	14	1	4	0	3	6	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0010	1486	9	9	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0011	1486	8	8	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0012	1486	8	1	5	0	1	1	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0013	1486	7	7	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0014	1486	7	2	1	4	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0015	1486	4	4	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0016	1486	3	3	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0017	1486	3	3	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0018	1486	3	3	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0019	1486	2	0	0	0	0	2	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0020	1486	2	2	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0021	1486	2	2	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0022	1486	1	1	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0023	1486	1	0	1	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0024	1486	1	1	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0025	1486	1	0	0	1	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0026	1486	1	0	1	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0027	1486	1	0	1	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0028	1486	1	1	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0029	1486	1	1	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0030	1486	1	0	0	1	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0031	1484	1	0	0	1	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0032	1486	1	0	0	0	1	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0033	1486	1	0	1	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0034	1486	1	0	1	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	t0035	1486	1	0	0	0	0	1	copy fasta	GPER1	chr7	1083113	1098810
GPHA2_chr11_64929471_64940893	0/1	t0001	363	270	59	55	124	11	20	copy fasta	GPHA2	chr11	64929471	64940893
GPHA2_chr11_64929471_64940893	1/0	t0002	363	153	26	14	86	4	22	copy fasta	GPHA2	chr11	64929471	64940893
GPHA2_chr11_64929471_64940893	0/0	t0003	363	3	3	0	0	0	0	copy fasta	GPHA2	chr11	64929471	64940893
GPHA2_chr11_64929471_64940893	0/0	t0004	363	1	0	0	0	1	0	copy fasta	GPHA2	chr11	64929471	64940893
GPHA2_chr11_64929471_64940893	0/0	t0005	363	1	0	1	0	0	0	copy fasta	GPHA2	chr11	64929471	64940893
GPHB5_chr14_63307835_63323935	1/1	t0001	206	422	98	80	190	16	36	copy fasta	GPHB5	chr14	63307835	63323935
GPHN_chr14_66503147_67186803	1/1	t0001	1248	216	56	46	95	3	14	copy fasta	GPHN	chr14	66503147	67186803
GPHN_chr14_66503147_67186803	0/0	t0002	1248	3	0	0	3	0	0	copy fasta	GPHN	chr14	66503147	67186803
GPHN_chr14_66503147_67186803	0/0	t0003	1248	2	0	1	1	0	0	copy fasta	GPHN	chr14	66503147	67186803
GPHN_chr14_66503147_67186803	0/0	t0004	1248	1	1	0	0	0	0	copy fasta	GPHN	chr14	66503147	67186803
GPHN_chr14_66503147_67186803	0/0	t0005	1248	1	0	1	0	0	0	copy fasta	GPHN	chr14	66503147	67186803
GPHN_chr14_66503147_67186803	0/0	t0006	1248	1	1	0	0	0	0	copy fasta	GPHN	chr14	66503147	67186803
GPHN_chr14_66503147_67186803	0/0	t0007	1248	1	0	0	1	0	0	copy fasta	GPHN	chr14	66503147	67186803
GPHN_chr14_66503147_67186803	0/0	t0008	1248	1	1	0	0	0	0	copy fasta	GPHN	chr14	66503147	67186803
GPHN_chr14_66503147_67186803	0/0	t0009	1248	1	0	1	0	0	0	copy fasta	GPHN	chr14	66503147	67186803
GPHN_chr14_66503147_67186803	0/0	t0010	1248	1	0	0	1	0	0	copy fasta	GPHN	chr14	66503147	67186803
GPHN_chr14_66503147_67186803	0/0	t0011	1248	1	0	0	0	1	0	copy fasta	GPHN	chr14	66503147	67186803
GPHN_chr14_66503147_67186803	0/0	t0012	1248	1	0	0	1	0	0	copy fasta	GPHN	chr14	66503147	67186803
GPHN_chr14_66503147_67186803	0/0	t0013	1248	1	0	0	1	0	0	copy fasta	GPHN	chr14	66503147	67186803
GPHN_chr14_66503147_67186803	0/0	t0014	1248	1	0	1	0	0	0	copy fasta	GPHN	chr14	66503147	67186803