JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPHN_chr14_66503147_67186803	0/0	t0015	1248	1	0	0	1	0	0	copy fasta	GPHN	chr14	66503147	67186803
GPHN_chr14_66503147_67186803	0/0	t0016	1248	1	1	0	0	0	0	copy fasta	GPHN	chr14	66503147	67186803
GPIHBP1_chr8_143208218_143222170	1/0	t0001	1703	23	6	5	9	1	1	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	t0002	1707	15	15	0	0	0	0	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	t0003	1703	13	1	4	4	2	2	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	t0004	1702	13	6	1	3	0	3	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/1	t0005	1703	12	6	1	2	1	1	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	t0006	1703	11	11	0	0	0	0	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	t0007	1702	5	4	1	0	0	0	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	t0008	1703	2	2	0	0	0	0	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	t0009	1703	1	1	0	0	0	0	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	t0010	1703	1	1	0	0	0	0	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	t0011	1703	1	0	0	1	0	0	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	t0012	1640	1	0	0	1	0	0	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	t0013	1677	1	0	0	1	0	0	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	t0014	1703	1	0	0	1	0	0	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	t0015	1749	1	0	0	0	0	1	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	t0016	1723	1	0	0	1	0	0	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	t0017	1725	1	0	0	1	0	0	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	t0018	1702	1	0	0	0	0	1	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	t0019	1703	1	0	0	0	0	1	copy fasta	GPIHBP1	chr8	143208218	143222170
GPIHBP1_chr8_143208218_143222170	0/0	t0020	1873	1	1	0	0	0	0	copy fasta	GPIHBP1	chr8	143208218	143222170
GPI_chr19_34360196_34407413	0/0	t0001	2449	123	33	21	41	12	16	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0002	2449	91	7	13	59	4	8	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	1/1	t0003	2449	21	13	3	0	0	3	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0004	2448	16	1	14	0	0	1	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0005	2448	9	7	1	1	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0006	2449	7	7	0	0	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0007	2450	6	0	2	0	1	3	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0008	2450	4	0	2	2	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0009	2449	4	0	0	4	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0010	2450	3	1	2	0	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0011	2449	3	2	0	0	0	1	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0012	2450	3	3	0	0	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0013	2450	3	2	0	0	0	1	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0014	2449	2	2	0	0	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0015	2449	2	0	0	0	0	2	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0016	2449	1	1	0	0	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0017	2449	1	0	0	1	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0018	2449	1	0	0	0	0	1	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0019	2449	1	0	0	1	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0020	2448	1	0	1	0	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0021	2449	1	1	0	0	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0022	2449	1	1	0	0	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0023	2449	1	0	0	0	0	1	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0024	2449	1	1	0	0	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0025	2449	1	0	0	1	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0026	2449	1	0	0	1	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0027	2449	1	0	1	0	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0028	2449	1	0	0	0	1	0	copy fasta	GPI	chr19	34360196	34407413