JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPM6A_chr4_175627937_175817264	0/0	t0005	2006	7	0	1	3	1	2	copy fasta	GPM6A	chr4	175627937	175817264
GPM6A_chr4_175627937_175817264	0/0	t0006	2006	2	0	0	2	0	0	copy fasta	GPM6A	chr4	175627937	175817264
GPM6A_chr4_175627937_175817264	0/0	t0007	2006	1	1	0	0	0	0	copy fasta	GPM6A	chr4	175627937	175817264
GPM6A_chr4_175627937_175817264	0/0	t0008	2006	1	0	0	0	0	1	copy fasta	GPM6A	chr4	175627937	175817264
GPM6A_chr4_175627937_175817264	0/0	t0009	2006	1	1	0	0	0	0	copy fasta	GPM6A	chr4	175627937	175817264
GPM6A_chr4_175627937_175817264	0/0	t0010	2006	1	0	0	0	0	1	copy fasta	GPM6A	chr4	175627937	175817264
GPM6A_chr4_175627937_175817264	0/0	t0011	2006	1	0	0	1	0	0	copy fasta	GPM6A	chr4	175627937	175817264
GPM6A_chr4_175627937_175817264	0/0	t0012	2006	1	0	0	0	0	1	copy fasta	GPM6A	chr4	175627937	175817264
GPM6A_chr4_175627937_175817264	0/0	t0013	2006	1	1	0	0	0	0	copy fasta	GPM6A	chr4	175627937	175817264
GPM6A_chr4_175627937_175817264	0/0	t0014	2043	1	0	0	1	0	0	copy fasta	GPM6A	chr4	175627937	175817264
GPM6B_chrX_13765939_13822093	0/0	t0001	2131	114	16	20	65	1	12	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	1/0	t0002	2132	105	24	18	50	5	7	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/1	t0003	2132	39	3	8	22	4	1	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0004	2131	33	17	2	13	0	1	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0005	2131	7	2	3	0	0	2	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0006	2132	4	0	0	3	0	1	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0007	2132	3	0	1	1	0	1	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0008	2132	2	0	1	0	1	0	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0009	2132	2	2	0	0	0	0	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0010	2131	2	0	0	2	0	0	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0011	2132	2	1	0	0	0	1	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0012	2132	1	0	1	0	0	0	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0013	2131	1	1	0	0	0	0	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0014	2131	1	0	0	1	0	0	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0015	2132	1	0	0	1	0	0	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0016	2132	1	1	0	0	0	0	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0017	2131	1	0	0	1	0	0	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0018	2132	1	0	1	0	0	0	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0019	2127	1	0	1	0	0	0	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0020	2131	1	0	1	0	0	0	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0021	2131	1	0	0	1	0	0	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0022	2130	1	0	0	0	0	1	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0023	2131	1	0	1	0	0	0	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0024	2128	1	0	0	1	0	0	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0025	2131	1	0	0	0	0	1	copy fasta	GPM6B	chrX	13765939	13822093
GPM6B_chrX_13765939_13822093	0/0	t0026	2131	1	1	0	0	0	0	copy fasta	GPM6B	chrX	13765939	13822093
GPN1_chr2_27624050_27656511	0/0	t0001	1321	123	7	22	77	4	13	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	t0002	1321	91	3	13	66	3	6	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/1	t0003	1321	86	27	18	17	7	16	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	1/0	t0004	1321	28	21	4	1	0	1	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	t0005	1321	16	11	4	0	0	1	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	t0006	1321	11	9	1	0	0	1	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	t0007	1321	3	3	0	0	0	0	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	t0008	1321	2	0	2	0	0	0	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	t0009	1321	1	0	0	1	0	0	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	t0010	1321	1	1	0	0	0	0	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	t0011	1321	1	0	1	0	0	0	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	t0012	1321	1	0	0	1	0	0	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	t0013	1321	1	0	1	0	0	0	copy fasta	GPN1	chr2	27624050	27656511
GPN1_chr2_27624050_27656511	0/0	t0014	1321	1	0	0	1	0	0	copy fasta	GPN1	chr2	27624050	27656511