JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPN2_chr1_26871132_26895283	1/1	t0001	3733	199	57	41	59	10	30	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0002	3734	9	1	1	5	0	2	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0003	3733	8	2	4	0	1	1	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0004	3733	8	1	3	0	3	1	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0005	3733	6	6	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0006	3733	2	2	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0007	3733	2	0	0	0	0	2	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0008	3733	2	2	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0009	3733	2	0	2	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0010	3733	2	0	0	2	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0011	3733	1	0	0	1	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0012	3733	1	1	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0013	3733	1	1	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0014	3733	1	0	1	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0015	3733	1	0	0	1	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0016	3733	1	0	0	1	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0017	3733	1	0	0	1	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0018	3733	1	1	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0019	3733	1	0	0	0	1	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0020	3733	1	0	1	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0021	3733	1	0	1	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0022	3733	1	1	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0023	3733	1	0	1	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0024	3733	1	1	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0025	3733	1	0	1	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0026	3771	1	1	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0027	3733	1	1	0	0	0	0	copy fasta	GPN2	chr1	26871132	26895283
GPN2_chr1_26871132_26895283	0/0	t0028	3734	1	0	0	0	1	0	copy fasta	GPN2	chr1	26871132	26895283
GPN3_chr12_110447486_110473257	1/1	t0001	603	322	89	66	112	16	37	copy fasta	GPN3	chr12	110447486	110473257
GPN3_chr12_110447486_110473257	0/0	t0002	603	1	0	0	0	0	1	copy fasta	GPN3	chr12	110447486	110473257
GPN3_chr12_110447486_110473257	0/0	t0003	603	1	1	0	0	0	0	copy fasta	GPN3	chr12	110447486	110473257
GPNMB_chr7_23241775_23280108	1/1	t0001	968	199	28	32	106	8	23	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	t0002	968	88	29	15	29	2	13	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	t0003	968	50	29	2	19	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	t0004	968	23	4	9	4	0	6	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	t0005	968	14	0	10	0	2	2	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	t0006	968	2	2	0	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	t0007	968	1	1	0	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	t0008	968	1	0	0	1	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	t0009	968	1	1	0	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	t0010	968	1	0	0	1	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPR101_chrX_137018929_137038995	0/0	t0001	6505	110	17	25	59	1	8	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/1	t0002	6506	64	3	13	29	8	10	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0003	6507	42	11	6	15	2	8	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	1/0	t0004	6506	16	8	3	4	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0005	6506	14	10	1	3	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0006	6505	7	0	0	7	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0007	6504	4	0	4	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0008	6507	4	3	1	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0009	6506	4	4	0	0	0	0	copy fasta	GPR101	chrX	137018929	137038995