Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AMACR_chr5_33981165_34013050	0/0	t0040	2960	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0041	2960	1	0	0	1	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0042	2960	1	0	0	1	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	t0043	2960	1	0	0	1	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMBN_chr4_70587256_70612288	1/1	t0001	662	327	26	72	174	14	39	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	t0002	661	91	32	8	41	2	8	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	t0003	662	15	0	1	14	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	t0004	661	15	14	1	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	t0005	661	13	11	2	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	t0006	661	10	9	0	0	0	1	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	t0007	662	2	2	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	t0008	651	2	0	0	0	2	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	t0009	662	1	0	0	1	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	t0010	661	1	1	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	t0011	661	1	1	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	t0012	745	1	0	0	1	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	t0013	638	1	0	0	1	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBP_chr9_114055127_114083300	1/1	t0001	204	419	82	81	193	16	45	copy fasta	AMBP	chr9	114055127	114083300
AMBP_chr9_114055127_114083300	0/0	t0002	204	35	14	3	13	2	3	copy fasta	AMBP	chr9	114055127	114083300
AMBRA1_chr11_46391414_46599023	1/1	t0001	1353	121	50	21	30	2	16	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	t0002	1353	21	19	2	0	0	0	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	t0003	1354	8	8	0	0	0	0	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	t0004	1353	4	4	0	0	0	0	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	t0005	1353	2	0	2	0	0	0	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	t0006	1353	1	0	0	1	0	0	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	t0007	1353	1	0	1	0	0	0	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	t0008	1353	1	0	0	1	0	0	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	t0009	1353	1	1	0	0	0	0	copy fasta	AMBRA1	chr11	46391414	46599023
AMD1_chr6_110869785_110900713	1/0	t0001	2419	186	40	48	59	11	27	copy fasta	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	t0002	2414	97	11	5	63	3	15	copy fasta	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	t0003	2414	67	2	1	61	0	3	copy fasta	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	t0004	2414	16	15	1	0	0	0	copy fasta	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	t0005	2413	11	1	3	4	0	3	copy fasta	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/1	t0006	2424	4	0	3	0	0	0	copy fasta	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	t0007	2414	2	1	1	0	0	0	copy fasta	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	t0008	2414	2	2	0	0	0	0	copy fasta	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	t0009	2413	2	0	0	2	0	0	copy fasta	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	t0010	2419	1	0	1	0	0	0	copy fasta	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	t0011	2419	1	0	1	0	0	0	copy fasta	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	t0012	2414	1	0	0	1	0	0	copy fasta	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	t0013	2414	1	1	0	0	0	0	copy fasta	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	t0014	2419	1	1	0	0	0	0	copy fasta	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	t0015	2413	1	1	0	0	0	0	copy fasta	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	t0016	2414	1	1	0	0	0	0	copy fasta	AMD1	chr6	110869785	110900713
AMDHD1_chr12_95938331_95973720	1/0	t0001	946	269	79	50	98	13	28	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	t0002	946	69	3	1	61	0	4	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/1	t0003	946	33	1	12	9	5	5	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	t0004	946	11	0	1	8	0	2	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	t0005	946	8	8	0	0	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	t0006	946	2	0	0	1	0	1	copy fasta	AMDHD1	chr12	95938331	95973720