JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR101_chrX_137018929_137038995	0/0	t0010	6506	3	3	0	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0011	6507	2	2	0	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0012	6507	2	0	0	2	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0013	6505	2	0	0	2	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0014	6511	2	2	0	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0015	6503	2	2	0	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0016	6507	1	0	0	1	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0017	6506	1	0	1	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0018	6506	1	0	0	0	0	1	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0019	6509	1	0	0	0	0	1	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0020	6508	1	0	0	1	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0021	6508	1	0	0	0	0	1	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0022	6507	1	1	0	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0023	6507	1	1	0	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0024	6507	1	0	0	0	0	1	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0025	6506	1	0	1	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0026	6507	1	0	0	1	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0027	6508	1	0	0	1	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0028	6506	1	0	0	1	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0029	6507	1	0	0	1	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0030	6506	1	0	0	1	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0031	6506	1	1	0	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0032	6507	1	1	0	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0033	6506	1	1	0	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0034	6506	1	1	0	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0035	6505	1	0	0	0	0	1	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0036	6505	1	0	0	1	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0037	6506	1	0	0	1	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0038	6505	1	0	0	1	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0039	6505	1	0	0	0	0	1	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0040	6505	1	0	0	1	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0041	6506	1	0	0	1	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0042	6505	1	0	1	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	t0043	6507	1	1	0	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR107_chr9_130048906_130145164	1/0	t0001	5071	80	9	14	44	4	8	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/1	t0002	5071	43	4	15	10	5	8	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0003	5071	36	5	3	20	1	7	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0004	5071	28	8	9	4	1	6	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0005	5063	27	0	9	18	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0006	5071	15	13	2	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0007	5071	6	1	1	4	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0008	5071	5	5	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0009	5071	5	0	4	1	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0010	5071	5	5	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0011	5064	4	4	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0012	5071	3	0	1	0	0	2	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0013	5064	3	3	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0014	5071	3	3	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0015	5071	3	0	0	0	0	3	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0016	5071	3	3	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164