JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR107_chr9_130048906_130145164	0/0	t0017	5071	2	0	0	0	0	2	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0018	5071	2	2	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0019	5071	2	0	0	2	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0020	5071	2	0	0	2	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0021	5063	2	2	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0022	5063	2	0	1	0	0	1	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0023	5071	2	2	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0024	5071	1	0	1	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0025	5071	1	0	1	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0026	5071	1	0	0	0	1	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0027	5071	1	1	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0028	5071	1	0	0	0	0	1	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0029	5071	1	0	0	1	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0030	5071	1	0	0	0	0	1	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0031	5071	1	1	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0032	5071	1	0	0	1	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0033	5071	1	0	1	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0034	5071	1	0	0	0	0	1	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0035	5071	1	1	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0036	5071	1	0	0	1	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0037	5071	1	1	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0038	5071	1	1	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0039	5064	1	1	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0040	5071	1	1	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0041	5071	1	0	0	0	0	1	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0042	5063	1	0	1	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0043	5063	1	0	1	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0044	5063	1	0	0	0	0	1	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0045	5071	1	1	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	t0046	5071	1	1	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR108_chr19_6724914_6742580	1/1	t0001	403	415	90	79	180	18	46	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	t0002	404	9	2	1	5	0	1	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	t0003	403	2	2	0	0	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	t0004	403	2	1	1	0	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	t0005	403	1	0	0	0	0	1	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	t0006	403	1	1	0	0	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	t0007	403	1	0	1	0	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	t0008	403	1	0	0	1	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	t0009	403	1	0	0	1	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	t0010	403	1	0	0	1	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR119_chrX_130374449_130390674	1/0	t0001	3335	139	15	25	80	5	13	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/1	t0002	3337	92	22	19	35	5	10	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0003	3335	18	14	3	0	1	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0004	3333	9	8	1	0	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0005	3335	4	4	0	0	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0006	3336	3	3	0	0	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0007	3337	3	0	0	3	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0008	3337	3	0	0	3	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0009	3336	3	3	0	0	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0010	3337	2	2	0	0	0	0	copy fasta	GPR119	chrX	130374449	130390674