JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR119_chrX_130374449_130390674	0/0	t0011	3335	2	0	2	0	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0012	3335	2	0	0	2	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0013	3335	2	0	2	0	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0014	3335	1	0	0	1	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0015	3337	1	0	0	1	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0016	3337	1	1	0	0	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0017	3337	1	0	0	0	0	1	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0018	3337	1	1	0	0	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0019	3338	1	0	0	1	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0020	3337	1	0	0	0	0	1	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0021	3336	1	1	0	0	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0022	3336	1	0	0	1	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0023	3335	1	0	0	1	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0024	3335	1	0	1	0	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0025	3336	1	0	0	1	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0026	3335	1	0	0	1	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0027	3335	1	0	0	0	0	1	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0028	3335	1	0	0	0	0	1	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0029	3336	1	0	0	1	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0030	3335	1	0	0	0	0	1	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0031	3337	1	0	1	0	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0032	3335	1	0	1	0	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	t0033	3335	1	0	0	1	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR12_chr13_26750200_26765786	0/0	t0001	3846	143	26	25	78	3	11	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/1	t0002	3846	114	18	21	56	6	12	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0003	3845	26	4	8	10	1	3	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0004	3846	15	5	7	0	3	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0005	3847	8	7	1	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0006	3846	8	8	0	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0007	3847	8	8	0	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0008	3847	7	0	4	2	0	1	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0009	3847	6	0	3	0	1	2	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0010	3846	6	0	0	6	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0011	3846	4	4	0	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0012	3846	3	0	0	0	0	3	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0013	3847	3	3	0	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0014	3846	2	1	1	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0015	3846	2	2	0	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	1/0	t0016	3847	2	1	0	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0017	3848	2	2	0	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0018	3846	2	0	0	0	2	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0019	3846	2	2	0	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0020	3846	2	0	0	0	0	2	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0021	3846	1	0	0	1	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0022	3847	1	1	0	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0023	3846	1	1	0	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0024	3847	1	1	0	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0025	3848	1	1	0	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0026	3846	1	0	0	1	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0027	3515	1	0	0	0	0	1	copy fasta	GPR12	chr13	26750200	26765786