JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR12_chr13_26750200_26765786	0/0	t0028	3846	1	0	0	1	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0029	3846	1	0	0	1	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0030	3846	1	0	1	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0031	3846	1	0	0	1	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0032	3846	1	0	0	0	0	1	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0033	3846	1	1	0	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0034	3846	1	0	0	1	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0035	3846	1	0	0	1	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0036	3846	1	0	1	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	t0037	3846	1	0	0	1	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR132_chr14_105044395_105070430	1/0	t0001	2512	169	48	28	77	3	12	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/1	t0002	2512	105	11	27	41	10	15	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0003	2512	48	8	0	31	0	9	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0004	2512	21	1	0	17	0	3	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0005	2512	13	0	3	10	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0006	2512	7	2	4	0	1	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0007	2505	5	0	0	5	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0008	2512	4	4	0	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0009	2512	4	3	1	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0010	2512	3	3	0	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0011	2512	3	0	0	1	0	2	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0012	2512	2	0	0	2	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0013	2512	2	2	0	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0014	2512	2	2	0	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0015	2512	2	0	0	2	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0016	2512	1	0	0	1	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0017	2512	1	0	1	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0018	2512	1	0	0	1	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0019	2512	1	0	0	1	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0020	2512	1	0	0	1	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0021	2512	1	0	0	0	0	1	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0022	2512	1	0	1	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0023	2512	1	1	0	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0024	2512	1	0	0	0	0	1	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0025	2512	1	0	1	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0026	2512	1	1	0	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0027	2512	1	1	0	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0028	2512	1	0	0	0	0	1	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0029	2512	1	1	0	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0030	2505	1	1	0	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	t0031	2512	1	1	0	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR135_chr14_59455759_59470380	1/1	t0001	3138	316	53	76	138	11	36	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	t0002	3138	11	7	0	1	3	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	t0003	3138	10	10	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	t0004	3139	7	7	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	t0005	3138	4	2	2	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	t0006	3137	4	4	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	t0007	3138	3	3	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	t0008	3138	2	0	0	2	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	t0009	3138	2	2	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380