JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR135_chr14_59455759_59470380	0/0	t0010	3138	1	1	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	t0011	3138	1	1	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	t0012	3138	1	0	0	1	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	t0013	3138	1	0	0	0	1	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	t0014	3138	1	0	0	0	0	1	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	t0015	3138	1	0	0	0	0	1	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	t0016	3138	1	0	0	0	1	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	t0017	3138	1	0	0	1	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	t0018	3138	1	0	0	1	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR137B_chr1_236137539_236213907	1/1	t0001	834	195	40	42	86	4	21	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	t0002	835	98	33	16	43	0	6	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	t0003	834	56	1	8	32	3	12	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	t0004	835	10	7	1	0	2	0	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	t0005	834	8	0	0	8	0	0	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	t0006	835	6	4	2	0	0	0	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	t0007	835	6	5	1	0	0	0	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	t0008	833	2	0	0	1	0	1	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	t0009	835	2	2	0	0	0	0	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	t0010	835	1	0	0	1	0	0	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	t0011	833	1	0	0	1	0	0	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	t0012	834	1	0	0	0	1	0	copy fasta	GPR137B	chr1	236137539	236213907
GPR137C_chr14_52547836_52642713	1/0	t0001	2911	222	41	26	115	9	30	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/1	t0002	2911	32	7	8	10	2	4	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0003	2911	29	0	1	28	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0004	2911	11	11	0	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0005	2911	8	0	3	5	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0006	2911	7	0	4	0	1	2	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0007	2911	6	6	0	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0008	2911	4	1	0	3	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0009	2911	3	3	0	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0010	2911	3	3	0	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0011	2911	3	3	0	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0012	2911	3	0	2	0	0	1	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0013	2911	2	2	0	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0014	2911	2	0	1	0	0	1	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0015	2911	1	1	0	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0016	2911	1	1	0	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0017	2911	1	0	1	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0018	2911	1	1	0	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0019	2911	1	0	0	1	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0020	2911	1	0	1	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0021	2911	1	0	1	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0022	2911	1	0	0	1	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0023	2911	1	1	0	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0024	2929	1	0	0	1	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	t0025	2911	1	1	0	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137_chr11_64280848_64294494	1/1	t0001	976	193	49	50	55	13	24	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	t0002	975	142	21	25	84	3	9	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	t0003	976	44	22	1	15	0	6	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	t0004	976	5	0	0	5	0	0	copy fasta	GPR137	chr11	64280848	64294494