JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR137_chr11_64280848_64294494	0/0	t0005	976	4	0	0	4	0	0	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	t0006	976	4	0	0	4	0	0	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	t0007	976	3	0	0	1	0	2	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	t0008	976	1	1	0	0	0	0	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	t0009	976	1	0	0	1	0	0	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	t0010	976	1	1	0	0	0	0	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	t0011	976	1	0	0	1	0	0	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	t0012	975	1	0	0	0	0	1	copy fasta	GPR137	chr11	64280848	64294494
GPR139_chr16_20023239_20078890	0/0	t0001	3776	53	18	7	13	7	8	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0002	3770	43	0	6	28	4	5	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0003	3770	33	10	9	7	0	7	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0004	3776	32	15	6	3	1	7	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/1	t0005	3770	18	0	1	15	1	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0006	3770	17	7	2	7	0	1	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0007	3773	17	0	4	11	0	2	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0008	3773	9	0	1	4	1	3	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0009	3780	9	0	4	0	0	5	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0010	3773	9	0	0	9	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0011	3776	7	0	2	5	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	1/0	t0012	3771	6	0	0	2	0	3	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0013	3780	5	0	4	0	0	1	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0014	3776	5	0	0	5	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0015	3771	5	0	0	3	0	2	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0016	3775	5	0	0	5	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0017	3770	5	0	0	5	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0018	3772	4	4	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0019	3778	4	0	0	4	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0020	3770	4	4	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0021	3766	4	4	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0022	3776	3	0	0	3	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0023	3770	3	0	0	3	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0024	3768	3	3	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0025	3776	3	0	0	3	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0026	3776	3	3	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0027	3776	3	2	1	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0028	3770	2	2	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0029	3770	2	2	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0030	3770	2	2	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0031	3766	2	2	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0032	3768	2	2	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0033	3773	2	0	0	2	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0034	3772	2	0	0	2	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0035	3772	2	2	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0036	3773	2	0	0	2	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0037	3778	2	0	0	2	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0038	3769	2	2	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0039	3770	2	0	0	2	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0040	3769	2	2	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0041	3776	1	0	0	1	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0042	3773	1	0	0	1	0	0	copy fasta	GPR139	chr16	20023239	20078890