JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR139_chr16_20023239_20078890	0/0	t0043	3769	1	0	0	0	0	1	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0044	3770	1	0	0	1	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0045	3772	1	0	0	0	0	1	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0046	3776	1	0	0	1	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0047	3776	1	0	0	1	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0048	3773	1	0	0	0	0	1	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0049	3769	1	1	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0050	3769	1	1	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0051	3771	1	0	0	1	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0052	3771	1	1	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0053	3773	1	0	0	1	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0054	3772	1	0	0	1	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0055	3772	1	0	0	1	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0056	3768	1	1	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0057	3770	1	0	0	0	0	1	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0058	3769	1	1	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0059	3769	1	1	0	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0060	3776	1	0	1	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0061	3771	1	0	0	1	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0062	3773	1	0	0	1	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0063	3776	1	0	0	1	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0064	3776	1	0	0	1	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0065	3770	1	0	0	1	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	t0066	3773	1	0	0	1	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR141_chr7_37678766_37748835	0/0	t0001	2802	121	39	22	43	3	14	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/1	t0002	2802	58	1	16	31	3	6	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0003	2802	55	9	2	33	0	11	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0004	2801	34	3	2	20	2	7	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0005	2802	29	14	2	12	0	1	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0006	2801	18	1	4	11	0	2	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0007	2802	14	0	0	13	0	1	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0008	2802	12	0	0	12	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0009	2802	9	6	1	0	1	1	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0010	2802	8	0	6	0	0	2	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0011	2802	4	4	0	0	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0012	2802	4	0	0	3	0	1	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0013	2802	4	1	0	2	1	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0014	2802	4	0	0	4	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0015	2802	3	3	0	0	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0016	2802	3	1	2	0	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0017	2802	2	1	1	0	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	1/0	t0018	2801	2	1	0	0	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0019	2802	2	1	1	0	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0020	2802	2	2	0	0	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0021	2801	1	0	0	1	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0022	2802	1	0	0	1	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0023	2802	1	1	0	0	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0024	2802	1	0	0	0	1	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0025	2802	1	1	0	0	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0026	2802	1	1	0	0	0	0	copy fasta	GPR141	chr7	37678766	37748835