JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR141_chr7_37678766_37748835	0/0	t0027	2802	1	0	1	0	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0028	2802	1	0	0	1	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0029	2802	1	0	0	1	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0030	2801	1	0	0	0	1	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0031	2802	1	1	0	0	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	t0032	2802	1	1	0	0	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR142_chr17_74362506_74377600	1/1	t0001	363	423	77	76	206	16	46	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	t0002	362	19	17	2	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	t0003	363	9	0	0	9	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	t0004	363	1	0	0	1	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR143_chrX_9720346_9770847	0/0	t0001	431	149	53	25	62	2	7	copy fasta	GPR143	chrX	9720346	9770847
GPR143_chrX_9720346_9770847	1/1	t0002	431	107	12	24	39	11	19	copy fasta	GPR143	chrX	9720346	9770847
GPR143_chrX_9720346_9770847	0/0	t0003	431	4	4	0	0	0	0	copy fasta	GPR143	chrX	9720346	9770847
GPR143_chrX_9720346_9770847	0/0	t0004	431	3	3	0	0	0	0	copy fasta	GPR143	chrX	9720346	9770847
GPR143_chrX_9720346_9770847	0/0	t0005	430	3	3	0	0	0	0	copy fasta	GPR143	chrX	9720346	9770847
GPR143_chrX_9720346_9770847	0/0	t0006	431	2	0	0	2	0	0	copy fasta	GPR143	chrX	9720346	9770847
GPR143_chrX_9720346_9770847	0/0	t0007	431	1	0	0	0	0	1	copy fasta	GPR143	chrX	9720346	9770847
GPR143_chrX_9720346_9770847	0/0	t0008	431	1	0	0	0	0	1	copy fasta	GPR143	chrX	9720346	9770847
GPR146_chr7_1039546_1064261	1/1	t0001	882	211	37	39	98	10	25	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0002	882	61	14	14	27	0	6	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0003	879	42	0	2	40	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0004	882	22	4	8	0	4	6	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0005	882	21	8	6	5	1	1	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0006	882	20	20	0	0	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0007	882	20	1	9	7	0	3	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0008	882	7	6	1	0	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0009	882	7	0	0	7	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0010	882	6	5	1	0	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0011	882	4	0	0	0	0	4	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0012	882	2	2	0	0	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0013	882	2	0	0	2	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0014	882	1	1	0	0	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0015	882	1	0	0	1	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0016	882	1	0	0	1	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0017	879	1	0	0	1	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0018	882	1	1	0	0	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0019	882	1	0	0	0	1	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0020	882	1	1	0	0	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0021	879	1	0	0	0	0	1	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	t0022	882	1	0	0	1	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR148_chr2_130724070_130735336	1/1	t0001	224	334	71	59	156	14	32	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	t0002	224	28	25	3	0	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR149_chr3_154329943_154435190	0/0	t0001	3332	79	9	17	39	5	9	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0002	3332	59	8	10	31	3	7	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0003	3328	45	2	12	27	0	4	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/1	t0004	3331	36	2	10	15	1	7	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0005	3331	17	8	2	7	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0006	3331	16	6	4	6	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0007	3331	16	3	1	12	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0008	3328	12	3	0	8	0	1	copy fasta	GPR149	chr3	154329943	154435190