JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR149_chr3_154329943_154435190	1/0	t0009	3332	11	0	7	0	1	2	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0010	3329	6	5	1	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0011	3329	4	4	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0012	3332	4	4	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0013	3330	3	0	0	1	0	2	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0014	3333	3	2	0	1	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0015	3331	3	3	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0016	3332	2	2	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0017	3332	2	0	0	2	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0018	3333	2	2	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0019	3328	2	0	2	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0020	3329	2	2	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0021	3332	2	0	2	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0022	3332	2	2	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0023	3332	1	1	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0024	3304	1	1	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0025	3332	1	0	0	1	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0026	3328	1	1	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0027	3328	1	1	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0028	3329	1	1	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0029	3330	1	1	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	t0030	3332	1	1	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR150_chr5_95615087_95627142	1/1	t0001	752	291	85	65	96	13	30	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	t0002	752	141	11	17	94	5	14	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	t0003	752	13	0	0	13	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	t0004	752	1	0	0	1	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	t0005	752	1	0	0	0	0	1	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	t0006	752	1	0	0	0	0	1	copy fasta	GPR150	chr5	95615087	95627142
GPR151_chr5_146508144_146521190	1/1	t0001	1788	204	43	31	108	5	15	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	t0002	1788	162	42	34	51	7	28	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	t0003	1787	20	1	1	15	1	2	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	t0004	1788	11	0	0	11	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	t0005	1788	4	3	1	0	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	t0006	1788	3	0	0	3	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	t0007	1785	2	2	0	0	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	t0008	1788	2	0	0	0	0	2	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	t0009	1788	2	2	0	0	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	t0010	1788	1	0	0	1	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	t0011	1788	1	1	0	0	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	t0012	1788	1	0	0	1	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	t0013	1788	1	1	0	0	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	t0014	1811	1	1	0	0	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	t0015	1788	1	0	1	0	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	t0016	1788	1	0	0	0	0	1	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	t0017	1788	1	0	0	0	1	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	t0018	1788	1	1	0	0	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	t0019	1785	1	1	0	0	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR152_chr11_67446301_67457729	1/1	t0001	17	360	90	72	156	14	26	copy fasta	GPR152	chr11	67446301	67457729
GPR153_chr1_6242353_6266098	0/0	t0001	2369	127	9	28	69	6	15	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	1/1	t0002	2369	100	27	15	37	8	11	copy fasta	GPR153	chr1	6242353	6266098