JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR153_chr1_6242353_6266098	0/0	t0003	2369	37	0	0	37	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0004	2369	12	7	2	3	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0005	2369	12	10	2	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0006	2369	6	6	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0007	2369	6	0	0	6	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0008	2369	6	6	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0009	2369	5	0	4	0	1	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0010	2369	4	4	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0011	2368	4	4	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0012	2369	4	0	1	0	0	3	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0013	2369	4	0	0	2	0	2	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0014	2369	3	1	2	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0015	2369	3	2	1	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0016	2369	2	0	2	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0017	2369	2	2	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0018	2369	2	0	0	0	0	2	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0019	2369	2	0	0	0	0	2	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0020	2369	2	0	0	0	0	2	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0021	2369	2	0	0	2	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0022	2369	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0023	2369	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0024	2369	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0025	2369	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0026	2369	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0027	2369	1	0	0	0	0	1	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0028	2369	1	0	0	0	0	1	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0029	2369	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0030	2369	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0031	2369	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0032	2369	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0033	2369	1	0	1	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0034	2369	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0035	2369	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0036	2369	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0037	2369	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0038	2369	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0039	2369	1	0	0	0	1	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0040	2369	1	0	0	0	0	1	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0041	2369	1	0	0	1	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0042	2369	1	0	1	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0043	2369	1	0	1	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0044	2369	1	0	1	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0045	2369	1	0	0	1	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0046	2352	1	0	0	1	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0047	2369	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0048	2369	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0049	2369	1	0	1	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	t0050	2369	1	0	0	1	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR155_chr2_174426571_174492029	0/0	t0001	4733	73	3	15	41	2	12	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/1	t0002	4736	23	1	10	1	2	8	copy fasta	GPR155	chr2	174426571	174492029