Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AMDHD1_chr12_95938331_95973720	0/0	t0007	946	2	2	0	0	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	t0008	946	2	0	1	0	0	1	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	t0009	946	2	1	1	0	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	t0010	946	1	0	0	1	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	t0011	946	1	0	1	0	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	t0012	946	1	0	1	0	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	t0013	932	1	0	0	0	0	1	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	t0014	946	1	1	0	0	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	t0015	946	1	1	0	0	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD2_chr16_2515371_2536417	1/1	t0001	1943	264	50	54	122	6	30	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0002	1943	11	11	0	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0003	1943	10	10	0	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0004	1943	5	0	3	0	0	2	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0005	1941	5	5	0	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0006	1943	3	3	0	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0007	1943	3	1	2	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0008	1943	2	0	2	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0009	1943	1	1	0	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0010	1943	1	1	0	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0011	1943	1	1	0	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0012	1943	1	1	0	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0013	1943	1	1	0	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0014	1943	1	0	1	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0015	1943	1	1	0	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0016	1943	1	0	0	0	0	1	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0017	1931	1	0	0	1	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0018	1943	1	0	0	0	0	1	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0019	1943	1	0	1	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0020	1943	1	1	0	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0021	1943	1	0	1	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0022	1943	1	0	0	1	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	t0023	1943	1	1	0	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMELX_chrX_11288413_11305761	1/1	t0001	218	300	80	54	124	11	29	copy fasta	AMELX	chrX	11288413	11305761
AMELY_chrY_6860918_6916752	1/1	t0001	348	131	18	20	70	5	16	copy fasta	AMELY	chrY	6860918	6916752
AMER1_chrX_64180117_64210708	0/0	t0001	4996	41	1	9	23	2	6	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0002	4996	14	0	4	10	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0003	5006	10	6	3	0	0	1	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0004	5000	9	1	0	7	0	1	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/1	t0005	4998	9	1	1	4	0	2	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	1/0	t0006	5000	9	1	2	3	0	2	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0007	4996	8	0	3	4	0	1	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0008	4994	5	0	0	4	0	1	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0009	5002	5	0	2	2	0	1	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0010	5006	4	4	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0011	5004	4	4	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0012	5000	4	0	0	4	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0013	5011	4	4	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0014	5002	4	0	0	3	1	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0015	5004	4	0	1	1	1	1	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0016	5000	3	3	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708