JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR155_chr2_174426571_174492029	0/0	t0003	4736	22	1	0	20	0	1	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0004	4749	21	3	6	2	3	7	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0005	4738	16	15	1	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0006	4753	15	2	9	0	2	2	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0007	4734	10	0	1	3	0	6	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0008	4748	8	6	1	1	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0009	4754	7	0	5	0	2	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0010	4747	7	7	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	1/0	t0011	4734	6	4	1	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0012	4748	5	5	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0013	4737	5	0	0	5	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0014	4734	5	0	1	3	0	1	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0015	4743	4	4	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0016	4737	4	1	2	0	0	1	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0017	4736	4	0	0	0	2	2	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0018	4737	4	0	0	4	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0019	4758	3	0	3	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0020	4748	3	3	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0021	4749	3	3	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0022	4742	3	3	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0023	4742	3	3	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0024	4749	2	2	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0025	4750	2	0	1	0	0	1	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0026	4735	2	0	1	0	1	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0027	4735	2	2	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0028	4758	1	0	0	0	0	1	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0029	4753	1	0	1	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0030	4752	1	0	1	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0031	4752	1	0	1	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0032	4749	1	0	0	0	0	1	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0033	4747	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0034	4750	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0035	4748	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0036	4743	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0037	4743	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0038	4745	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0039	4744	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0040	4738	1	0	0	1	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0041	4738	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0042	4737	1	0	0	0	0	1	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0043	4736	1	0	0	0	0	1	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0044	4736	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0045	4735	1	0	0	1	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0046	4736	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0047	4735	1	0	0	1	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0048	4738	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0049	4739	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0050	4737	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0051	4737	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0052	4735	1	0	0	1	0	0	copy fasta	GPR155	chr2	174426571	174492029