JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR155_chr2_174426571_174492029	0/0	t0053	4733	1	0	0	1	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0054	4733	1	0	1	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0055	4733	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0056	4732	1	0	0	1	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0057	4733	1	0	0	0	0	1	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0058	4734	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0059	4734	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0060	4735	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0061	4733	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0062	4749	1	0	1	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0063	4748	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0064	4747	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	t0065	4738	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR156_chr3_120160478_120290222	0/0	t0001	2131	75	6	19	40	1	9	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	t0002	2131	66	7	16	32	3	8	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	t0003	2131	61	27	4	23	0	7	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/1	t0004	2131	61	23	22	0	4	11	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	1/0	t0005	2129	32	10	5	11	2	3	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	t0006	2131	5	4	1	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	t0007	2131	5	0	5	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	t0008	2131	4	4	0	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	t0009	2131	2	0	0	2	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	t0010	2131	2	2	0	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	t0011	2129	2	2	0	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	t0012	2131	1	1	0	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	t0013	2131	1	0	0	1	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	t0014	2131	1	0	0	1	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	t0015	2131	1	1	0	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	t0016	2131	1	0	0	1	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	t0017	2131	1	0	0	1	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	t0018	2129	1	1	0	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR157_chr1_9095305_9134102	0/0	t0001	4206	63	2	11	37	1	12	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0002	4207	37	0	12	17	0	8	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0003	4189	28	2	11	6	4	5	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0004	4193	28	0	10	16	0	2	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0005	4192	21	1	0	19	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/1	t0006	4188	20	3	3	11	1	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0007	4191	13	2	0	11	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0008	4192	10	10	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0009	4189	8	0	4	2	0	2	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0010	4191	8	0	3	5	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0011	4190	6	6	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0012	4207	6	0	3	0	1	2	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0013	4207	6	0	1	4	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0014	4204	5	5	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0015	4192	5	4	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0016	4206	4	4	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0017	4191	4	0	0	4	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0018	4193	4	0	0	3	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0019	4191	4	4	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102