JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR157_chr1_9095305_9134102	0/0	t0020	4206	4	0	0	3	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0021	4205	4	1	2	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0022	4206	4	2	1	0	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0023	4207	4	1	0	2	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0024	4207	4	4	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0025	4204	3	3	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0026	4203	3	3	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0027	4192	3	1	0	2	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0028	4206	3	3	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0029	4188	2	1	1	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0030	4187	2	0	1	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0031	4189	2	0	1	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0032	4189	2	0	0	0	0	2	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	1/0	t0033	4190	2	0	0	0	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0034	4192	2	0	1	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0035	4191	2	0	0	2	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0036	4194	2	0	0	2	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0037	4192	2	2	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0038	4194	2	0	1	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0039	4207	2	0	0	2	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0040	4207	2	0	0	0	1	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0041	4207	2	0	0	1	1	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0042	4205	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0043	4207	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0044	4189	1	0	0	0	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0045	4189	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0046	4192	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0047	4191	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0048	4187	1	0	0	0	1	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0049	4192	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0050	4188	1	0	0	0	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0051	4188	1	0	1	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0052	4189	1	0	0	0	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0053	4189	1	0	1	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0054	4191	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0055	4190	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0056	4189	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0057	4190	1	0	1	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0058	4204	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0059	4189	1	0	0	0	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0060	4189	1	0	1	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0061	4189	1	0	1	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0062	4190	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0063	4190	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0064	4190	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0065	4205	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0066	4202	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0067	4192	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0068	4193	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0069	4192	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102