JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR157_chr1_9095305_9134102	0/0	t0070	4193	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0071	4207	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0072	4192	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0073	4193	1	0	0	0	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0074	4193	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0075	4191	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0076	4195	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0077	4193	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0078	4192	1	0	0	0	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0079	4193	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0080	4205	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0081	4205	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0082	4204	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0083	4207	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0084	4204	1	0	1	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0085	4206	1	0	1	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0086	4206	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0087	4204	1	0	0	0	1	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0088	4191	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0089	4205	1	0	1	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0090	4207	1	0	1	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0091	4193	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0092	4206	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0093	4208	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0094	4208	1	0	1	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0095	4193	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0096	4208	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0097	4193	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0098	4193	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0099	4208	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0100	4209	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0101	4207	1	0	0	0	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0102	4206	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0103	4207	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0104	4206	1	0	0	0	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0105	4206	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0106	4188	1	0	0	0	1	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	t0107	4207	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR158_chr10_25170001_25607229	0/0	t0001	3376	45	32	5	5	0	3	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	1/0	t0002	3376	44	17	7	9	4	6	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0003	3375	23	5	3	14	1	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0004	3374	8	0	0	7	1	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/1	t0005	3375	5	1	1	1	0	1	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0006	3376	5	4	1	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0007	3375	5	3	0	2	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0008	3376	3	0	0	3	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0009	3375	3	0	0	0	0	3	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0010	3372	3	3	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0011	3376	2	0	0	0	0	2	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0012	3375	2	2	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229