JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR158_chr10_25170001_25607229	0/0	t0013	3372	2	1	1	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0014	3376	1	0	0	1	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0015	3375	1	0	0	1	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0016	3376	1	0	0	1	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0017	3376	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0018	3376	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0019	3376	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0020	3376	1	0	1	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0021	3376	1	0	0	1	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0022	3375	1	0	0	1	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0023	3375	1	0	0	0	0	1	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0024	3375	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	t0025	3375	1	0	1	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR15LG_chr10_84168801_84190294	1/1	t0001	580	339	45	60	175	13	44	copy fasta	GPR15LG	chr10	84168801	84190294
GPR15LG_chr10_84168801_84190294	0/0	t0002	580	79	27	11	36	3	2	copy fasta	GPR15LG	chr10	84168801	84190294
GPR15LG_chr10_84168801_84190294	0/0	t0003	580	15	14	1	0	0	0	copy fasta	GPR15LG	chr10	84168801	84190294
GPR15LG_chr10_84168801_84190294	0/0	t0004	580	9	6	3	0	0	0	copy fasta	GPR15LG	chr10	84168801	84190294
GPR15LG_chr10_84168801_84190294	0/0	t0005	580	7	5	0	0	2	0	copy fasta	GPR15LG	chr10	84168801	84190294
GPR15LG_chr10_84168801_84190294	0/0	t0006	580	4	0	0	4	0	0	copy fasta	GPR15LG	chr10	84168801	84190294
GPR15LG_chr10_84168801_84190294	0/0	t0007	580	2	0	2	0	0	0	copy fasta	GPR15LG	chr10	84168801	84190294
GPR15LG_chr10_84168801_84190294	0/0	t0008	580	1	0	1	0	0	0	copy fasta	GPR15LG	chr10	84168801	84190294
GPR15LG_chr10_84168801_84190294	0/0	t0009	580	1	0	0	1	0	0	copy fasta	GPR15LG	chr10	84168801	84190294
GPR15LG_chr10_84168801_84190294	0/0	t0010	580	1	1	0	0	0	0	copy fasta	GPR15LG	chr10	84168801	84190294
GPR15_chr3_98526978_98539681	0/0	t0001	1622	117	4	27	77	3	6	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	t0002	1622	85	31	14	33	0	7	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	1/0	t0003	1622	80	32	15	16	4	12	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	t0004	1622	79	6	12	49	3	9	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	t0005	1622	56	11	2	36	1	6	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/1	t0006	1622	37	5	12	12	4	3	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	t0007	1622	3	2	1	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	t0008	1622	2	0	0	2	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	t0009	1622	2	0	1	0	1	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	t0010	1622	2	1	0	0	0	1	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	t0011	1622	2	2	0	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	t0012	1622	1	0	0	1	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	t0013	1622	1	1	0	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	t0014	1622	1	1	0	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	t0015	1622	1	1	0	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	t0016	1622	1	1	0	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR160_chr3_170032995_170090392	1/0	t0001	946	134	38	26	50	6	13	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	t0002	946	97	7	22	56	4	8	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/1	t0003	946	61	10	10	40	0	0	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	t0004	946	17	7	4	5	0	1	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	t0005	946	9	0	4	1	0	4	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	t0006	946	8	6	2	0	0	0	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	t0007	946	8	8	0	0	0	0	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	t0008	946	6	6	0	0	0	0	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	t0009	946	3	2	1	0	0	0	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	t0010	946	3	0	2	0	0	1	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	t0011	946	2	0	0	0	0	2	copy fasta	GPR160	chr3	170032995	170090392