JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR160_chr3_170032995_170090392	0/0	t0012	945	2	1	1	0	0	0	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	t0013	946	1	1	0	0	0	0	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	t0014	946	1	1	0	0	0	0	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	t0015	945	1	1	0	0	0	0	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	t0016	946	1	0	0	1	0	0	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	t0017	946	1	0	0	1	0	0	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	t0018	946	1	0	0	0	0	1	copy fasta	GPR160	chr3	170032995	170090392
GPR161_chr1_168074542_168141930	1/0	t0001	6226	115	13	16	65	6	14	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0002	6226	48	12	7	25	0	4	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0003	6226	25	1	7	13	1	3	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0004	6226	13	4	5	1	2	1	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0005	6221	9	0	7	2	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0006	6226	9	0	1	6	0	2	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0007	6227	8	8	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0008	6226	8	0	3	5	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0009	6226	8	7	1	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0010	6222	6	0	5	0	1	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0011	6226	5	0	2	0	2	1	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0012	6226	5	4	1	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0013	6226	4	2	0	1	1	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0014	6226	4	4	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0015	6217	4	4	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0016	6223	4	4	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0017	6222	4	1	0	0	2	1	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0018	6226	3	3	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0019	6240	3	0	3	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0020	6226	3	0	0	3	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0021	6212	3	3	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0022	6226	3	0	0	3	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0023	6226	3	3	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0024	6226	3	0	0	2	0	1	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0025	6226	2	2	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0026	6212	2	2	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0027	6226	2	0	0	2	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0028	6226	2	0	0	1	0	1	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0029	6217	1	1	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0030	6226	1	0	0	0	0	1	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0031	6227	1	1	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0032	6226	1	0	1	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0033	6210	1	0	0	0	0	1	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0034	6226	1	0	0	1	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0035	6226	1	0	1	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0036	6226	1	0	0	1	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0037	6226	1	0	1	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0038	6226	1	0	0	1	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0039	6227	1	0	0	0	1	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0040	6227	1	0	0	1	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0041	6227	1	1	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0042	6226	1	1	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0043	6212	1	1	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930