JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR161_chr1_168074542_168141930	0/0	t0044	6226	1	0	0	0	0	1	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0045	6226	1	1	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0046	6226	1	1	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0047	6226	1	0	1	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0048	6226	1	0	1	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0049	6226	1	0	1	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0050	6226	1	0	0	1	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0051	6226	1	0	0	1	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0052	6226	1	0	0	1	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/1	t0053	6226	1	0	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0054	6226	1	0	0	1	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0055	6226	1	0	0	1	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0056	6226	1	0	0	1	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0057	6226	1	0	0	1	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0058	6222	1	1	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0059	6226	1	0	0	0	0	1	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	t0060	6217	1	1	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR162_chr12_6816821_6832421	1/1	t0001	729	298	58	47	156	9	26	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	t0002	730	81	9	28	18	7	19	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	t0003	729	56	14	5	34	0	3	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	t0004	729	4	3	1	0	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	t0005	730	4	4	0	0	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	t0006	729	3	0	0	3	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	t0007	729	2	2	0	0	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	t0008	729	2	2	0	0	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	t0009	729	2	1	1	0	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	t0010	730	2	2	0	0	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	t0011	729	1	0	0	1	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	t0012	729	1	0	1	0	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	t0013	729	1	0	1	0	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	t0014	730	1	1	0	0	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR171_chr3_151192832_151208216	1/1	t0001	851	194	22	38	108	6	18	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	t0002	852	80	5	19	43	7	6	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	t0003	852	42	30	6	2	0	4	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	t0004	852	31	0	0	28	1	2	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	t0005	851	23	1	7	10	2	3	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	t0006	852	22	21	1	0	0	0	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	t0007	852	21	7	1	10	0	3	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	t0008	852	21	0	4	12	1	4	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	t0009	852	10	4	0	6	0	0	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	t0010	851	4	1	0	1	0	2	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	t0011	851	1	0	0	0	1	0	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	t0012	851	1	1	0	0	0	0	copy fasta	GPR171	chr3	151192832	151208216
GPR173_chrX_53043789_53085615	1/1	t0001	3666	62	6	17	30	2	5	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0002	3660	26	13	1	10	0	2	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0003	3667	10	1	2	4	0	3	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0004	3667	9	1	3	2	1	2	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0005	3662	7	0	1	4	2	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0006	3668	6	2	0	3	0	1	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0007	3661	6	4	0	1	0	1	copy fasta	GPR173	chrX	53043789	53085615