JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR173_chrX_53043789_53085615	0/0	t0008	3664	5	3	2	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0009	3660	3	0	0	0	0	3	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0010	3667	3	0	1	1	0	1	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0011	3662	3	3	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0012	3662	3	0	0	3	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0013	3660	3	3	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0014	3663	2	1	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0015	3665	2	2	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0016	3664	2	2	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0017	3666	2	2	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0018	3668	2	0	0	2	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0019	3663	2	0	0	1	0	1	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0020	3663	1	1	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0021	3661	1	0	1	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0022	3668	1	0	1	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0023	3666	1	1	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0024	3662	1	0	0	0	1	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0025	3664	1	1	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0026	3664	1	0	0	0	0	1	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0027	3666	1	1	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0028	3670	1	0	0	0	0	1	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0029	3673	1	0	1	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0030	3667	1	1	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0031	3668	1	0	0	0	0	1	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0032	3700	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0033	3669	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0034	3667	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0035	3667	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0036	3669	1	0	1	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0037	3667	1	0	1	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0038	3670	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0039	3667	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0040	3659	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0041	3661	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0042	3666	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0043	3667	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0044	3667	1	1	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0045	3674	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0046	3665	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0047	3666	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0048	3666	1	0	1	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0049	3668	1	0	1	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0050	3670	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0051	3662	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0052	3662	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0053	3662	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0054	3662	1	0	1	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0055	3663	1	0	0	0	1	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0056	3659	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0057	3659	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615