JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR173_chrX_53043789_53085615	0/0	t0058	3660	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0059	3662	1	1	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0060	3661	1	1	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0061	3661	1	0	1	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0062	3660	1	0	0	0	1	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0063	3662	1	0	0	0	1	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0064	3660	1	1	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0065	3813	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0066	3659	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0067	3660	1	0	1	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0068	3659	1	1	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	t0069	3666	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR174_chrX_79139688_79180318	0/0	t0001	4469	40	0	1	35	2	2	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0002	4469	28	13	10	1	1	3	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0003	4483	27	1	2	24	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0004	4487	21	2	1	18	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0005	4473	20	0	3	13	2	2	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0006	4479	19	1	7	10	0	1	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0007	4481	15	2	5	4	1	3	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0008	4485	13	6	2	3	1	1	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0009	4473	12	10	2	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0010	4491	10	0	1	9	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0011	4477	8	1	2	5	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0012	4489	6	1	1	0	3	1	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0013	4481	6	1	2	1	1	1	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	1/0	t0014	4493	4	0	1	1	0	1	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0015	4477	4	2	0	0	0	2	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0016	4481	4	2	1	1	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/1	t0017	4477	4	0	3	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0018	4473	4	3	0	1	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0019	4465	3	0	0	2	0	1	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0020	4464	3	0	1	0	0	2	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0021	4477	3	2	1	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0022	4469	2	2	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0023	4499	2	0	0	2	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0024	4495	2	0	0	2	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0025	4475	2	0	0	1	0	1	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0026	4481	2	0	2	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0027	4473	2	0	0	2	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0028	4489	2	0	2	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0029	4469	2	2	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0030	4484	2	2	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0031	4480	2	2	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0032	4459	1	0	1	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0033	4480	1	0	0	0	0	1	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0034	4476	1	0	0	0	0	1	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0035	4497	1	0	0	0	0	1	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0036	4485	1	0	0	1	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0037	4485	1	0	0	0	1	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0038	4485	1	0	0	0	0	1	copy fasta	GPR174	chrX	79139688	79180318