JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR174_chrX_79139688_79180318	0/0	t0039	4481	1	0	0	0	0	1	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0040	4477	1	1	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0041	4477	1	0	0	0	0	1	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0042	4473	1	1	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0043	4473	1	1	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0044	4473	1	1	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0045	4469	1	0	1	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0046	4470	1	1	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0047	4487	1	0	0	1	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0048	4483	1	0	0	1	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0049	4480	1	0	0	0	0	1	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0050	4497	1	0	0	1	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0051	4493	1	1	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0052	4477	1	1	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0053	4493	1	0	0	0	0	1	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0054	4487	1	0	1	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0055	4483	1	0	0	1	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0056	4480	1	0	0	1	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0057	4476	1	0	0	1	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0058	4473	1	0	0	0	0	1	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0059	4468	1	0	0	1	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0060	4464	1	0	0	1	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0061	4469	1	0	0	1	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0062	4465	1	0	0	1	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0063	4483	1	0	1	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0064	4475	1	0	0	0	1	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0065	4485	1	1	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0066	4481	1	1	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0067	4473	1	1	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0068	4492	1	1	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0069	4480	1	1	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0070	4476	1	1	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0071	4486	1	1	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	t0072	4482	1	1	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR176_chr15_39794008_39925266	0/0	t0001	2365	164	37	36	74	4	13	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	1/1	t0002	2365	72	14	12	32	1	11	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0003	2373	32	6	2	20	1	3	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0004	2365	18	17	1	0	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0005	2366	4	4	0	0	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0006	2365	3	0	0	3	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0007	2364	3	2	1	0	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0008	2365	2	0	0	2	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0009	2373	1	1	0	0	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0010	2365	1	1	0	0	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0011	2365	1	1	0	0	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0012	2364	1	1	0	0	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0013	2365	1	1	0	0	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0014	2365	1	0	0	1	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0015	2373	1	0	0	1	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0016	2365	1	0	1	0	0	0	copy fasta	GPR176	chr15	39794008	39925266