JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AMER1_chrX_64180117_64210708	0/0	t0017	5004	3	3	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0018	4998	3	0	0	2	0	1	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0019	4994	3	0	3	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0020	4998	3	0	0	1	2	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0021	4996	3	0	0	0	3	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0022	5005	3	0	3	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0023	5004	3	0	0	1	0	2	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0024	5000	3	1	2	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0025	4998	2	2	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0026	5008	2	2	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0027	5004	2	2	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0028	4992	2	0	0	2	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0029	4994	2	0	0	1	0	1	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0030	5000	2	0	0	1	0	1	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0031	4994	2	0	0	2	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0032	5009	2	2	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0033	5002	2	0	0	0	0	2	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0034	5013	2	2	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0035	5011	2	2	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0036	5006	2	1	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0037	5017	2	2	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0038	4996	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0039	5001	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0040	4999	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0041	4997	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0042	4987	1	0	1	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0043	5027	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0044	4999	1	0	1	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0045	4995	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0046	4977	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0047	5002	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0048	5008	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0049	4998	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0050	5008	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0051	5004	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0052	5002	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0053	5000	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0054	4998	1	0	1	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0055	5002	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0056	5000	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0057	4998	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0058	5010	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0059	5000	1	0	1	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0060	5012	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0061	4980	1	0	0	0	0	1	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0062	4997	1	0	1	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0063	4996	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0064	4996	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0065	4992	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0066	4996	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708