JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR176_chr15_39794008_39925266	0/0	t0017	2365	1	1	0	0	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0018	2365	1	0	0	0	0	1	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0019	2365	1	0	1	0	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0020	2365	1	1	0	0	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0021	2366	1	0	0	1	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	t0022	2365	1	1	0	0	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR179_chr17_38319571_38348956	0/1	t0001	2062	182	11	34	102	13	21	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0002	2062	57	21	6	26	0	4	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0003	2062	25	10	7	2	2	4	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0004	2062	13	11	1	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0005	2062	8	1	6	0	1	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0006	2062	6	5	1	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0007	2052	5	5	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0008	2062	5	5	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0009	2062	4	4	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0010	2062	4	4	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0011	2062	3	1	2	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0012	2062	3	3	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0013	2062	2	2	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0014	2062	2	0	2	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0015	2062	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0016	2062	1	0	0	0	0	1	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0017	2062	1	0	1	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0018	2062	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0019	2052	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0020	2062	1	0	0	0	0	1	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0021	2062	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0022	2062	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0023	2062	1	0	0	0	0	1	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0024	2062	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0025	2062	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0026	2062	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0027	2062	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0028	2062	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0029	2062	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0030	2062	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0031	2062	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0032	2062	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0033	2062	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	t0034	2062	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR17_chr2_127641153_127657639	0/1	t0001	997	165	2	38	104	6	14	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	1/0	t0002	997	103	60	22	7	7	6	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0003	997	51	3	10	29	2	7	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0004	997	40	5	6	12	1	16	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0005	997	13	0	0	13	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0006	997	10	9	0	0	0	1	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0007	997	7	1	5	0	0	1	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0008	997	7	7	0	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0009	997	3	0	0	3	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0010	997	2	0	2	0	0	0	copy fasta	GPR17	chr2	127641153	127657639