JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR17_chr2_127641153_127657639	0/0	t0011	997	2	2	0	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0012	997	2	0	0	2	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0013	997	2	2	0	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0014	997	2	0	0	0	0	2	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0015	997	2	2	0	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0016	997	1	0	0	1	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0017	997	1	1	0	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0018	997	1	1	0	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0019	997	1	0	0	1	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0020	997	1	0	0	1	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0021	997	1	0	0	1	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0022	997	1	0	0	1	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0023	997	1	0	1	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0024	997	1	0	0	0	0	1	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0025	997	1	1	0	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	t0026	997	1	0	0	1	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR180_chr13_94596857_94639661	1/0	t0001	7562	139	1	41	71	8	17	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/1	t0002	7562	72	10	5	41	3	12	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0003	7562	38	30	5	0	0	3	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0004	7562	19	6	5	0	4	4	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0005	7561	15	15	0	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0006	7562	6	0	0	5	0	1	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0007	7562	6	4	0	2	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0008	7550	4	4	0	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0009	7562	3	3	0	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0010	7562	3	0	1	0	1	1	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0011	7562	3	2	1	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0012	7562	2	0	0	2	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0013	7562	2	0	0	2	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0014	7562	2	0	0	2	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0015	7562	2	0	2	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0016	7592	2	2	0	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0017	7562	2	2	0	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0018	7562	1	0	0	1	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0019	7562	1	1	0	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0020	7562	1	1	0	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0021	7562	1	0	0	1	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0022	7562	1	0	0	1	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0023	7562	1	0	0	0	0	1	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0024	7562	1	1	0	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0025	7562	1	0	1	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0026	7562	1	0	1	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0027	7562	1	0	0	1	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0028	7562	1	0	0	1	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0029	7561	1	1	0	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0030	7562	1	1	0	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0031	7562	1	0	1	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0032	7562	1	1	0	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0033	7550	1	1	0	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0034	7562	1	1	0	0	0	0	copy fasta	GPR180	chr13	94596857	94639661