JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR180_chr13_94596857_94639661	0/0	t0035	7562	1	0	0	1	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0036	7562	1	0	0	1	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0037	7562	1	0	0	0	0	1	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0038	7562	1	1	0	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0039	7562	1	0	1	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0040	7562	1	1	0	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	t0041	7562	1	1	0	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR182_chr12_56989492_57003447	1/1	t0001	2197	227	56	52	98	6	13	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	t0002	2195	68	14	13	28	5	8	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	t0003	2197	9	9	0	0	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	t0004	2197	3	3	0	0	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	t0005	2195	3	3	0	0	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	t0006	2197	2	0	2	0	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	t0007	2197	2	0	0	0	1	1	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	t0008	2197	1	1	0	0	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	t0009	2197	1	0	1	0	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	t0010	2197	1	0	0	1	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	t0011	2197	1	0	0	1	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	t0012	2197	1	0	0	1	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	t0013	2197	1	0	0	1	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	t0014	2197	1	0	0	0	0	1	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	t0015	2197	1	0	0	0	0	1	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	t0016	2197	1	1	0	0	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	t0017	2195	1	1	0	0	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR183_chr13_99289539_99312399	1/1	t0001	600	308	72	56	133	12	33	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	t0002	600	105	13	12	72	3	5	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	t0003	600	35	5	11	12	1	6	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	t0004	600	3	3	0	0	0	0	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	t0005	600	1	1	0	0	0	0	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	t0006	600	1	0	1	0	0	0	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	t0007	600	1	0	0	1	0	0	copy fasta	GPR183	chr13	99289539	99312399
GPR18_chr13_99249739_99263379	1/1	t0001	399	414	93	69	194	13	43	copy fasta	GPR18	chr13	99249739	99263379
GPR18_chr13_99249739_99263379	0/0	t0002	399	9	0	5	0	1	3	copy fasta	GPR18	chr13	99249739	99263379
GPR18_chr13_99249739_99263379	0/0	t0003	399	4	0	0	4	0	0	copy fasta	GPR18	chr13	99249739	99263379
GPR18_chr13_99249739_99263379	0/0	t0004	399	1	1	0	0	0	0	copy fasta	GPR18	chr13	99249739	99263379
GPR19_chr12_12655890_12701183	1/1	t0001	663	408	90	78	182	14	42	copy fasta	GPR19	chr12	12655890	12701183
GPR19_chr12_12655890_12701183	0/0	t0002	663	1	0	0	1	0	0	copy fasta	GPR19	chr12	12655890	12701183
GPR19_chr12_12655890_12701183	0/0	t0003	663	1	0	0	1	0	0	copy fasta	GPR19	chr12	12655890	12701183
GPR19_chr12_12655890_12701183	0/0	t0004	663	1	1	0	0	0	0	copy fasta	GPR19	chr12	12655890	12701183
GPR19_chr12_12655890_12701183	0/0	t0005	663	1	1	0	0	0	0	copy fasta	GPR19	chr12	12655890	12701183
GPR20_chr8_141351470_141372286	0/1	t0001	488	389	89	70	170	12	47	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	t0002	488	3	2	1	0	0	0	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	t0003	488	3	3	0	0	0	0	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	t0004	488	2	0	0	2	0	0	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	t0005	488	2	0	1	0	0	1	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	t0006	488	1	0	0	1	0	0	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	t0007	488	1	0	0	1	0	0	copy fasta	GPR20	chr8	141351470	141372286
GPR21_chr9_123028667_123040665	0/1	t0001	512	131	12	21	78	5	14	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	t0002	510	71	3	32	17	4	15	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	t0003	514	60	15	5	34	3	3	copy fasta	GPR21	chr9	123028667	123040665