JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR21_chr9_123028667_123040665	0/0	t0004	508	38	36	2	0	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	t0005	516	30	4	4	19	2	1	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	1/0	t0006	522	11	10	0	0	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	t0007	518	5	2	0	3	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	t0008	520	4	2	0	1	0	1	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	t0009	514	2	0	0	2	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	t0010	504	2	2	0	0	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	t0011	512	1	0	0	1	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	t0012	506	1	0	1	0	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	t0013	512	1	0	1	0	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	t0014	512	1	0	0	1	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR22_chr7_107465057_107480684	1/1	t0001	1669	356	65	58	177	14	40	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	t0002	1669	14	14	0	0	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	t0003	1669	11	0	7	0	4	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	t0004	1669	8	8	0	0	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	t0005	1670	5	5	0	0	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	t0006	1669	4	3	1	0	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	t0007	1669	3	0	0	3	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	t0008	1669	2	2	0	0	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	t0009	1669	1	1	0	0	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	t0010	1669	1	1	0	0	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	t0011	1669	1	1	0	0	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	t0012	1669	1	0	0	1	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	t0013	1670	1	0	1	0	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	t0014	1669	1	0	0	1	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	t0015	1669	1	0	1	0	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	t0016	1669	1	0	0	1	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	t0017	1669	1	0	0	1	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR25_chr1_200867981_200879178	1/1	t0001	113	320	73	56	144	7	38	copy fasta	GPR25	chr1	200867981	200879178
GPR25_chr1_200867981_200879178	0/0	t0002	113	65	11	14	31	4	5	copy fasta	GPR25	chr1	200867981	200879178
GPR25_chr1_200867981_200879178	0/0	t0003	113	49	12	6	25	5	1	copy fasta	GPR25	chr1	200867981	200879178
GPR26_chr10_123661355_123702399	0/1	t0001	9291	75	5	15	43	2	9	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0002	9288	68	4	14	43	2	5	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0003	9292	50	0	10	33	2	5	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0004	9293	26	0	16	2	2	6	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0005	9293	19	0	7	2	4	6	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0006	9261	13	12	1	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0007	9297	11	9	0	1	1	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0008	9293	8	7	1	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0009	9296	8	8	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0010	9293	7	1	1	5	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0011	9296	7	6	1	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0012	9292	6	0	0	6	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0013	9292	6	0	1	5	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0014	9292	5	4	0	0	0	1	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0015	9292	5	5	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0016	9292	4	4	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0017	9293	4	4	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0018	9297	4	3	1	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0019	9293	3	3	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399