JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR26_chr10_123661355_123702399	0/0	t0070	9293	1	0	1	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0071	9292	1	1	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0072	9293	1	0	1	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0073	9293	1	0	1	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0074	9291	1	1	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0075	9292	1	0	0	0	0	1	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0076	9293	1	1	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0077	9293	1	1	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0078	9297	1	0	0	0	0	1	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0079	9235	1	0	0	0	0	1	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0080	9235	1	0	1	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0081	9293	1	0	0	0	1	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0082	9293	1	0	0	1	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0083	9297	1	1	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0084	9297	1	1	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0085	9297	1	0	0	1	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0086	9297	1	1	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0087	9297	1	1	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	t0088	9293	1	0	0	0	1	0	copy fasta	GPR26	chr10	123661355	123702399
GPR27_chr3_71748855_71761496	1/0	t0001	1515	285	67	53	125	12	27	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	t0002	1515	85	14	11	43	1	16	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/1	t0003	1518	26	3	6	13	1	2	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	t0004	1515	5	0	2	0	2	1	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	t0005	1516	3	3	0	0	0	0	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	t0006	1515	2	0	2	0	0	0	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	t0007	1516	2	2	0	0	0	0	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	t0008	1515	2	0	0	0	0	2	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	t0009	1516	1	1	0	0	0	0	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	t0010	1515	1	1	0	0	0	0	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	t0011	1515	1	0	1	0	0	0	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	t0012	1515	1	0	1	0	0	0	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	t0013	1515	1	0	0	1	0	0	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	t0014	1518	1	0	0	1	0	0	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	t0015	1518	1	0	0	1	0	0	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	t0016	1515	1	1	0	0	0	0	copy fasta	GPR27	chr3	71748855	71761496
GPR31_chr6_167150247_167162980	1/0	t0001	1775	240	53	56	99	11	20	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/1	t0002	1775	98	3	18	54	3	19	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	t0003	1775	37	17	1	19	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	t0004	1775	14	14	0	0	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	t0005	1775	11	0	0	11	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	t0006	1775	10	0	0	10	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	t0007	1776	10	6	2	0	1	1	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	t0008	1775	10	0	0	10	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	t0009	1775	4	3	1	0	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	t0010	1775	2	0	0	0	0	2	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	t0011	1775	1	0	0	0	1	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	t0012	1775	1	0	1	0	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	t0013	1775	1	0	0	1	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	t0014	1775	1	0	0	1	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	t0015	1775	1	0	0	1	0	0	copy fasta	GPR31	chr6	167150247	167162980