JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR31_chr6_167150247_167162980	0/0	t0016	1775	1	0	1	0	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR32_chr19_50765464_50776732	1/1	t0001	199	419	100	82	175	14	46	copy fasta	GPR32	chr19	50765464	50776732
GPR32_chr19_50765464_50776732	0/0	t0002	199	1	0	0	1	0	0	copy fasta	GPR32	chr19	50765464	50776732
GPR33_chr14_31477875_31493039	1/1	t0001	239	409	84	69	193	16	45	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	0/0	t0002	239	17	4	1	12	0	0	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	0/0	t0003	237	11	2	0	6	0	3	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	0/0	t0004	237	10	0	0	10	0	0	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	0/0	t0005	239	1	0	0	1	0	0	copy fasta	GPR33	chr14	31477875	31493039
GPR34_chrX_41683973_41702275	0/1	t0001	781	264	63	43	125	8	24	copy fasta	GPR34	chrX	41683973	41702275
GPR34_chrX_41683973_41702275	1/0	t0002	781	21	0	5	6	3	6	copy fasta	GPR34	chrX	41683973	41702275
GPR34_chrX_41683973_41702275	0/0	t0003	781	9	7	2	0	0	0	copy fasta	GPR34	chrX	41683973	41702275
GPR34_chrX_41683973_41702275	0/0	t0004	777	2	2	0	0	0	0	copy fasta	GPR34	chrX	41683973	41702275
GPR34_chrX_41683973_41702275	0/0	t0005	781	1	0	0	1	0	0	copy fasta	GPR34	chrX	41683973	41702275
GPR35_chr2_240620480_240638159	0/0	t0001	2371	96	27	16	42	3	8	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0002	2405	83	1	10	50	3	19	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0003	2405	78	0	11	55	3	9	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	1/0	t0004	2371	48	26	13	0	5	3	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0005	2371	21	6	13	2	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/1	t0006	2405	13	0	1	3	0	8	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0007	2372	9	9	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0008	2371	5	5	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0009	2371	5	5	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0010	2371	3	0	0	3	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0011	2405	3	3	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0012	2371	3	0	3	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0013	2372	2	1	1	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0014	2405	2	0	0	2	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0015	2405	2	0	0	2	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0016	2405	2	0	2	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0017	2371	2	2	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0018	2371	2	2	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0019	2405	2	1	1	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0020	2371	1	0	1	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0021	2405	1	0	0	1	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0022	2371	1	1	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0023	2372	1	1	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0024	2371	1	1	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0025	2371	1	1	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0026	2405	1	0	0	1	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0027	2435	1	0	0	1	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0028	2405	1	0	0	1	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0029	2405	1	1	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0030	2405	1	0	0	1	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0031	2405	1	0	0	1	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0032	2371	1	0	0	0	0	1	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0033	2371	1	0	1	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0034	2405	1	0	1	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0035	2371	1	1	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0036	2405	1	0	0	1	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	t0037	2371	1	1	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159