JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR37L1_chr1_202117917_202138592	0/0	t0100	5083	1	1	0	0	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	t0101	5083	1	1	0	0	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	t0102	5083	1	0	0	0	1	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	t0103	5083	1	0	1	0	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	t0104	5083	1	0	1	0	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	t0105	5084	1	0	0	1	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	t0106	5084	1	0	0	1	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	t0107	5084	1	0	0	1	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	t0108	5084	1	0	0	1	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	t0109	5082	1	0	0	1	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	t0110	5083	1	0	0	0	1	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	t0111	5083	1	1	0	0	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	t0112	5084	1	0	1	0	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	t0113	5084	1	0	0	0	0	1	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	t0114	5084	1	1	0	0	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	t0115	5085	1	0	0	0	1	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	t0116	5082	1	1	0	0	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	t0117	5084	1	1	0	0	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	t0118	5084	1	1	0	0	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37_chr7_124738885_124770792	0/0	t0001	3457	79	1	5	62	5	6	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0002	3457	48	3	5	39	1	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0003	3457	48	4	20	15	0	9	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0004	3457	42	1	11	15	4	11	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	1/0	t0005	3457	35	19	9	1	4	1	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0006	3457	32	5	1	24	0	2	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0007	3457	28	17	3	0	2	6	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0008	3457	13	1	0	11	0	1	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0009	3457	8	0	0	8	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/1	t0010	3457	8	0	4	1	1	1	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0011	3457	8	8	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0012	3457	5	5	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0013	3457	5	0	0	5	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0014	3457	4	0	4	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0015	3457	3	1	2	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0016	3457	3	3	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0017	3457	3	3	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0018	3457	3	0	1	1	0	1	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0019	3457	3	3	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0020	3457	2	0	0	0	0	2	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0021	3457	2	2	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0022	3457	2	0	0	2	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0023	3457	2	0	1	0	1	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0024	3457	2	0	0	2	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0025	3457	2	2	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0026	3457	1	1	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0027	3457	1	0	0	0	0	1	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0028	3457	1	1	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0029	3457	1	0	0	1	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0030	3457	1	0	0	1	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0031	3457	1	1	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792