Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AMER1_chrX_64180117_64210708	0/0	t0067	4996	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0068	4996	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0069	5002	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0070	5002	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0071	4998	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0072	5009	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0073	5009	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0074	5001	1	0	1	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0075	5017	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0076	5015	1	0	1	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0077	5013	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0078	5008	1	0	1	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0079	5004	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0080	5015	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0081	5008	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0082	5007	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0083	5006	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0084	5019	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0085	5010	1	0	1	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0086	5012	1	0	1	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0087	5025	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0088	5033	1	0	1	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0089	5010	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0090	4993	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0091	5005	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0092	5003	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	t0093	5005	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER2_chr13_25156679_25177288	0/0	t0001	8595	65	4	17	28	8	8	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0002	8597	48	4	3	41	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0003	8595	42	13	13	9	4	3	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0004	8595	40	0	11	21	0	8	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0005	8595	25	2	4	15	0	4	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/1	t0006	8597	16	0	3	11	0	1	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0007	8596	14	5	3	1	0	5	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0008	8596	12	11	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0009	8594	7	0	2	3	1	1	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	1/0	t0010	8595	7	6	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0011	8599	6	0	2	4	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0012	8598	6	0	0	6	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0013	8598	5	0	2	3	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0014	8597	5	0	4	0	1	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0015	8594	5	3	0	2	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0016	8594	4	4	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0017	8598	4	0	0	4	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0018	8597	4	0	0	4	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0019	8597	4	0	0	4	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0020	8597	4	4	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0021	8596	4	0	0	4	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0022	8593	2	2	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0023	8597	2	2	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288