JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR37_chr7_124738885_124770792	0/0	t0032	3457	1	0	0	0	0	1	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0033	3457	1	0	1	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0034	3457	1	0	0	0	0	1	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0035	3457	1	0	0	1	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0036	3457	1	0	0	1	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0037	3457	1	0	0	1	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0038	3457	1	0	0	1	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0039	3457	1	0	1	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0040	3457	1	1	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0041	3457	1	1	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0042	3457	1	0	0	0	0	1	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0043	3457	1	0	1	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0044	3457	1	0	1	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	t0045	3457	1	1	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR39_chr2_132411805_132651582	0/0	t0001	1215	125	52	19	32	6	16	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	t0002	1215	58	6	12	26	4	10	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	t0003	1215	12	10	0	2	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	t0004	1215	4	4	0	0	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	t0005	1215	2	2	0	0	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	t0006	1215	1	0	0	1	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	t0007	1215	1	1	0	0	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	t0008	1215	1	1	0	0	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	t0009	1215	1	1	0	0	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	t0010	1158	1	0	0	1	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	t0011	1215	1	1	0	0	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	t0012	1215	1	0	1	0	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR3_chr1_27387622_27400814	0/1	t0001	1145	339	82	55	141	14	46	copy fasta	GPR3	chr1	27387622	27400814
GPR3_chr1_27387622_27400814	1/0	t0002	1145	7	6	0	0	0	0	copy fasta	GPR3	chr1	27387622	27400814
GPR3_chr1_27387622_27400814	0/0	t0003	1145	3	2	1	0	0	0	copy fasta	GPR3	chr1	27387622	27400814
GPR3_chr1_27387622_27400814	0/0	t0004	1145	2	0	0	2	0	0	copy fasta	GPR3	chr1	27387622	27400814
GPR3_chr1_27387622_27400814	0/0	t0005	1145	1	0	1	0	0	0	copy fasta	GPR3	chr1	27387622	27400814
GPR3_chr1_27387622_27400814	0/0	t0006	1145	1	0	1	0	0	0	copy fasta	GPR3	chr1	27387622	27400814
GPR3_chr1_27387622_27400814	0/0	t0007	1145	1	0	0	1	0	0	copy fasta	GPR3	chr1	27387622	27400814
GPR3_chr1_27387622_27400814	0/0	t0008	1145	1	0	1	0	0	0	copy fasta	GPR3	chr1	27387622	27400814
GPR3_chr1_27387622_27400814	0/0	t0009	1145	1	0	1	0	0	0	copy fasta	GPR3	chr1	27387622	27400814
GPR42_chr19_35366068_35377962	0/0	t0001	626	309	81	51	128	14	35	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	t0002	626	40	1	18	14	3	4	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	t0003	625	31	1	8	20	1	1	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	t0004	626	8	7	1	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	t0005	626	3	3	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	t0006	626	2	2	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	t0007	626	2	2	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	1/0	t0008	625	1	0	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	t0009	626	1	1	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	t0010	626	1	0	0	1	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	t0011	626	1	0	0	1	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR45_chr2_105236743_105248467	1/1	t0001	607	405	93	72	184	14	40	copy fasta	GPR45	chr2	105236743	105248467
GPR45_chr2_105236743_105248467	0/0	t0002	607	2	0	0	2	0	0	copy fasta	GPR45	chr2	105236743	105248467
GPR45_chr2_105236743_105248467	0/0	t0003	626	2	2	0	0	0	0	copy fasta	GPR45	chr2	105236743	105248467
GPR45_chr2_105236743_105248467	0/0	t0004	607	1	0	1	0	0	0	copy fasta	GPR45	chr2	105236743	105248467