JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR45_chr2_105236743_105248467	0/0	t0005	607	1	1	0	0	0	0	copy fasta	GPR45	chr2	105236743	105248467
GPR45_chr2_105236743_105248467	0/0	t0006	607	1	0	1	0	0	0	copy fasta	GPR45	chr2	105236743	105248467
GPR4_chr19_45584764_45607212	1/1	t0001	1964	214	23	50	104	12	23	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0002	1964	121	31	22	51	4	13	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0003	1964	38	7	7	19	0	5	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0004	1964	19	0	0	18	0	1	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0005	1965	18	6	2	4	0	6	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0006	1964	12	12	0	0	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0007	1964	9	8	1	0	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0008	1964	5	0	0	5	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0009	1964	2	1	1	0	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0010	1964	2	1	1	0	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0011	1965	1	1	0	0	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0012	1964	1	1	0	0	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0013	1965	1	1	0	0	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0014	1965	1	1	0	0	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0015	1964	1	0	0	1	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0016	1964	1	0	0	1	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0017	1965	1	1	0	0	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0018	1964	1	1	0	0	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0019	1964	1	1	0	0	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	t0020	1964	1	0	0	1	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR50_chrX_151171584_151186465	1/1	t0001	167	354	80	62	163	13	34	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	t0002	167	1	1	0	0	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	t0003	167	1	0	0	1	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR52_chr1_174442964_174454545	0/1	t0001	497	415	89	68	198	16	43	copy fasta	GPR52	chr1	174442964	174454545
GPR52_chr1_174442964_174454545	0/0	t0002	497	3	3	0	0	0	0	copy fasta	GPR52	chr1	174442964	174454545
GPR52_chr1_174442964_174454545	1/0	t0003	497	2	0	0	0	0	1	copy fasta	GPR52	chr1	174442964	174454545
GPR55_chr2_230902328_230930242	0/0	t0001	2886	154	6	22	101	7	18	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0002	2886	35	6	13	8	3	5	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/1	t0003	2886	35	3	12	17	0	2	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0004	2886	25	1	0	23	0	1	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0005	2886	22	8	0	13	1	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0006	2886	19	13	2	1	0	3	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0007	2886	15	11	0	2	1	1	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0008	2886	14	14	0	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	1/0	t0009	2885	13	0	8	0	1	3	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0010	2886	12	11	1	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0011	2886	8	2	1	0	1	4	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0012	2884	5	5	0	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0013	2886	5	0	5	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0014	2886	3	0	0	0	1	2	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0015	2886	3	3	0	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0016	2886	3	3	0	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0017	2886	3	3	0	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0018	2886	2	2	0	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0019	2886	2	0	0	1	0	1	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0020	2886	2	2	0	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0021	2885	2	0	2	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0022	2886	1	0	0	1	0	0	copy fasta	GPR55	chr2	230902328	230930242