JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR55_chr2_230902328_230930242	0/0	t0023	2886	1	0	0	0	0	1	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0024	2886	1	0	1	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0025	2886	1	0	0	0	1	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0026	2886	1	0	0	0	0	1	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0027	2886	1	0	0	1	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0028	2886	1	1	0	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0029	2886	1	0	0	1	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0030	2886	1	0	0	1	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0031	2886	1	1	0	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0032	2886	1	1	0	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0033	2886	1	1	0	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0034	2886	1	0	1	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0035	2886	1	0	0	1	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0036	2886	1	1	0	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	t0037	2886	1	0	0	1	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR61_chr1_109534872_109552260	1/1	t0001	3566	254	69	49	92	11	31	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	t0002	3566	103	15	11	64	1	12	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	t0003	3564	4	0	0	4	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	t0004	3566	4	0	0	4	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	t0005	3566	3	0	3	0	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	t0006	3566	3	0	0	3	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	t0007	3566	3	3	0	0	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	t0008	3566	2	0	0	0	0	2	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	t0009	3566	2	0	1	0	0	1	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	t0010	3566	2	0	2	0	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	t0011	3566	1	1	0	0	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	t0012	3566	1	0	0	1	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	t0013	3566	1	1	0	0	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	t0014	3566	1	0	0	1	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	t0015	3566	1	0	0	1	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	t0016	3566	1	1	0	0	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR62_chr3_51950381_51962499	1/0	t0001	1013	221	63	34	89	6	28	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/1	t0002	1013	87	2	21	44	4	15	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/0	t0003	1013	11	9	2	0	0	0	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/0	t0004	1013	9	0	0	9	0	0	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/0	t0005	1013	8	3	1	3	0	1	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/0	t0006	1013	4	4	0	0	0	0	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/0	t0007	1013	3	0	0	3	0	0	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/0	t0008	1013	1	0	0	0	0	1	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/0	t0009	1013	1	1	0	0	0	0	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/0	t0010	1013	1	0	0	0	0	1	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/0	t0011	1013	1	1	0	0	0	0	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/0	t0012	1013	1	1	0	0	0	0	copy fasta	GPR62	chr3	51950381	51962499
GPR63_chr6_96789125_96842477	0/0	t0001	4708	112	20	23	56	3	10	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0002	4708	88	11	19	48	3	7	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0003	4708	76	5	9	48	5	9	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0004	4708	19	4	8	0	2	5	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0005	4707	18	13	0	5	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0006	4708	14	13	1	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0007	4707	10	0	0	10	0	0	copy fasta	GPR63	chr6	96789125	96842477