JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR63_chr6_96789125_96842477	0/0	t0008	4707	7	6	1	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0009	4706	7	1	0	5	0	1	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0010	4708	6	1	3	0	0	2	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0011	4707	4	3	1	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0012	4707	3	3	0	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/1	t0013	4707	2	0	1	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0014	4707	2	1	0	1	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0015	4707	2	2	0	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0016	4708	1	1	0	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0017	4708	1	0	0	1	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0018	4708	1	0	0	1	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0019	4708	1	0	0	0	0	1	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0020	4708	1	1	0	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0021	4708	1	0	0	1	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0022	4707	1	1	0	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0023	4707	1	1	0	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0024	4708	1	0	1	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0025	4708	1	0	1	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0026	4708	1	0	0	0	1	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0027	4707	1	1	0	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0028	4708	1	0	1	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0029	4708	1	1	0	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0030	4708	1	0	0	0	0	1	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0031	4708	1	1	0	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0032	4708	1	1	0	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0033	4708	1	1	0	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0034	4708	1	1	0	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0035	4708	1	0	1	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	t0036	4708	1	1	0	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	1/0	t0037	4708	1	0	0	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR65_chr14_88000135_88019811	0/0	t0001	3499	133	10	21	80	6	16	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0002	3496	80	21	8	37	1	13	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0003	3497	35	17	1	17	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	1/1	t0004	3498	32	4	12	4	4	6	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0005	3497	20	0	0	20	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0006	3495	15	0	6	0	5	4	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0007	3496	15	0	6	8	0	1	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0008	3498	11	10	1	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0009	3499	10	1	1	6	0	2	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0010	3497	8	1	7	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0011	3497	5	5	0	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0012	3498	5	5	0	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0013	3500	5	4	0	1	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0014	3497	4	4	0	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0015	3497	2	1	1	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0016	3497	2	0	0	2	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0017	3500	1	1	0	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0018	3499	1	0	0	1	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0019	3495	1	0	1	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0020	3497	1	0	1	0	0	0	copy fasta	GPR65	chr14	88000135	88019811