JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR65_chr14_88000135_88019811	0/0	t0021	3497	1	1	0	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0022	3496	1	0	1	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0023	3496	1	1	0	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0024	3497	1	0	1	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0025	3497	1	1	0	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0026	3499	1	0	0	1	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0027	3500	1	0	0	1	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0028	3499	1	1	0	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0029	3499	1	0	0	1	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0030	3499	1	0	0	1	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0031	3499	1	0	0	1	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0032	3498	1	1	0	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0033	3498	1	0	1	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0034	3498	1	0	0	1	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0035	3498	1	0	1	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	t0036	3497	1	1	0	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR68_chr14_91227532_91249704	1/1	t0001	1959	314	51	60	162	12	27	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0002	1959	52	19	2	22	0	9	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0003	1959	14	1	1	6	0	6	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0004	1959	8	0	8	0	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0005	1957	5	4	1	0	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0006	1956	4	4	0	0	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0007	1959	4	0	2	0	0	2	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0008	1959	4	4	0	0	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0009	1959	2	2	0	0	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0010	1959	2	0	0	2	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0011	1959	2	2	0	0	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0012	1959	1	0	0	0	0	1	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0013	1959	1	0	0	0	0	1	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0014	1941	1	0	1	0	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0015	1959	1	1	0	0	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0016	1959	1	1	0	0	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0017	1959	1	1	0	0	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0018	1959	1	0	0	1	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0019	1959	1	0	0	1	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	t0020	1959	1	0	1	0	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR6_chr6_109973311_109985720	0/1	t0001	695	283	57	53	136	13	23	copy fasta	GPR6	chr6	109973311	109985720
GPR6_chr6_109973311_109985720	0/0	t0002	695	89	14	23	35	4	13	copy fasta	GPR6	chr6	109973311	109985720
GPR6_chr6_109973311_109985720	1/0	t0003	695	67	21	5	32	1	7	copy fasta	GPR6	chr6	109973311	109985720
GPR6_chr6_109973311_109985720	0/0	t0004	695	3	2	1	0	0	0	copy fasta	GPR6	chr6	109973311	109985720
GPR6_chr6_109973311_109985720	0/0	t0005	695	2	0	0	0	0	2	copy fasta	GPR6	chr6	109973311	109985720
GPR6_chr6_109973311_109985720	0/0	t0006	695	2	1	1	0	0	0	copy fasta	GPR6	chr6	109973311	109985720
GPR6_chr6_109973311_109985720	0/0	t0007	695	1	0	0	0	0	1	copy fasta	GPR6	chr6	109973311	109985720
GPR6_chr6_109973311_109985720	0/0	t0008	695	1	0	0	1	0	0	copy fasta	GPR6	chr6	109973311	109985720
GPR6_chr6_109973311_109985720	0/0	t0009	695	1	0	1	0	0	0	copy fasta	GPR6	chr6	109973311	109985720
GPR6_chr6_109973311_109985720	0/0	t0010	695	1	1	0	0	0	0	copy fasta	GPR6	chr6	109973311	109985720
GPR6_chr6_109973311_109985720	0/0	t0011	695	1	0	0	1	0	0	copy fasta	GPR6	chr6	109973311	109985720
GPR6_chr6_109973311_109985720	0/0	t0012	695	1	0	0	1	0	0	copy fasta	GPR6	chr6	109973311	109985720
GPR75_chr2_53847912_53864967	1/1	t0001	472	350	84	59	157	14	34	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	t0002	472	70	10	11	44	2	3	copy fasta	GPR75	chr2	53847912	53864967