JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR75_chr2_53847912_53864967	0/0	t0003	473	3	0	0	2	0	1	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	t0004	472	3	3	0	0	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	t0005	472	2	0	1	1	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	t0006	472	1	1	0	0	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	t0007	799	1	0	0	1	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	t0008	472	1	0	0	1	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	t0009	472	1	0	1	0	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR78_chr4_8575392_8595023	0/0	t0001	3251	56	1	5	44	2	4	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0002	3251	42	2	14	21	3	2	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0003	3252	36	2	10	24	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0004	3251	29	1	14	2	1	11	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0005	3251	22	2	3	14	3	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0006	3250	20	4	1	10	1	4	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0007	3251	17	0	8	9	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0008	3251	16	0	0	14	0	2	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/1	t0009	3251	13	0	1	8	0	3	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0010	3248	11	0	1	6	3	1	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0011	3251	11	6	4	0	0	1	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0012	3252	11	11	0	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0013	3250	10	0	0	10	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0014	3250	10	8	0	0	0	2	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0015	3251	9	0	1	6	0	2	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0016	3251	8	6	0	2	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0017	3252	7	7	0	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0018	3252	7	3	1	3	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0019	3252	6	0	0	6	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0020	3251	5	0	0	5	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0021	3250	5	5	0	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0022	3250	5	4	0	0	0	1	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0023	3251	4	3	1	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0024	3248	3	1	1	0	0	1	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0025	3249	3	1	1	1	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0026	3251	3	0	1	2	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0027	3252	3	0	1	2	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0028	3250	3	0	0	2	1	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0029	3250	3	0	0	3	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0030	3250	3	3	0	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0031	3250	3	0	0	0	0	3	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0032	3251	2	0	2	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0033	3251	2	0	2	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0034	3251	2	2	0	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0035	3249	2	0	0	0	0	2	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0036	3251	2	1	1	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0037	3250	2	0	1	0	1	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0038	3251	2	2	0	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0039	3250	2	1	0	0	1	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0040	3252	2	1	1	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0041	3250	2	2	0	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0042	3250	2	2	0	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0043	3251	2	1	0	1	0	0	copy fasta	GPR78	chr4	8575392	8595023