JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR78_chr4_8575392_8595023	0/0	t0094	3252	1	0	1	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	t0095	3249	1	0	1	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR82_chrX_41719181_41735130	0/0	t0001	2305	79	3	13	54	4	5	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0002	2303	27	14	2	6	2	3	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0003	2305	20	2	3	11	0	4	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0004	2304	17	5	3	5	2	2	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0005	2306	13	8	1	4	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0006	2307	12	3	4	4	0	1	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0007	2306	10	2	0	6	0	2	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	1/0	t0008	2308	8	0	3	0	0	4	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0009	2305	7	2	1	3	0	1	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0010	2307	7	2	2	3	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0011	2306	6	2	2	1	0	1	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0012	2309	5	0	0	5	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0013	2306	5	0	0	5	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0014	2306	4	0	0	4	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0015	2307	4	0	1	3	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0016	2305	4	4	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0017	2303	4	2	0	2	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0018	2304	3	0	0	3	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0019	2303	3	1	2	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0020	2309	2	0	2	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0021	2307	2	0	0	0	1	1	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0022	2307	2	0	0	2	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0023	2307	2	0	0	2	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0024	2307	2	1	0	1	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/1	t0025	2308	2	0	1	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0026	2309	2	0	1	0	1	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0027	2302	2	1	1	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0028	2309	2	1	0	0	1	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0029	2304	2	2	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0030	2305	2	2	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0031	2306	2	0	2	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0032	2309	1	0	0	0	0	1	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0033	2312	1	0	0	0	1	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0034	2307	1	0	0	1	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0035	2310	1	0	0	0	1	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0036	2304	1	1	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0037	2308	1	0	0	1	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0038	2304	1	1	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0039	2305	1	1	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0040	2312	1	1	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0041	2310	1	1	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0042	2311	1	1	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0043	2294	1	1	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0044	2305	1	0	0	1	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0045	2305	1	1	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0046	2303	1	0	0	1	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0047	2302	1	0	0	1	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0048	2308	1	0	0	1	0	0	copy fasta	GPR82	chrX	41719181	41735130