JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR82_chrX_41719181_41735130	0/0	t0049	2307	1	0	0	1	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0050	2304	1	1	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0051	2312	1	0	0	0	0	1	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0052	2308	1	1	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0053	2307	1	0	1	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0054	2305	1	1	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0055	2306	1	0	1	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0056	2305	1	1	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0057	2304	1	1	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0058	2306	1	0	0	1	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0059	2291	1	1	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	t0060	2317	1	1	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR83_chr11_94372316_94406419	0/0	t0001	3006	66	5	16	38	3	4	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0002	3006	45	2	5	27	2	9	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0003	2999	43	1	5	34	0	3	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0004	3006	35	9	3	21	1	1	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/1	t0005	3006	31	2	3	16	0	9	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0006	3004	30	0	11	9	1	9	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0007	3006	27	11	3	9	0	4	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0008	3006	18	0	11	0	4	3	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0009	3006	13	12	1	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	1/0	t0010	3006	13	11	1	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0011	3026	13	0	0	13	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0012	3006	10	2	0	8	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0013	3006	9	7	2	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0014	3004	7	7	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0015	3006	5	0	2	0	3	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0016	3005	4	0	0	4	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0017	3006	4	0	4	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0018	3003	4	0	2	1	0	1	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0019	3006	4	4	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0020	3006	3	0	0	3	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0021	3006	3	3	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0022	3006	3	0	0	0	0	3	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0023	3006	2	2	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0024	3006	2	0	0	2	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0025	3005	2	2	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0026	3006	2	2	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0027	2991	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0028	3026	1	0	0	1	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0029	3005	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0030	3004	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0031	3006	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0032	3006	1	0	0	1	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0033	3006	1	0	0	1	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0034	3004	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0035	3006	1	0	0	0	0	1	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0036	2999	1	0	0	1	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0037	3005	1	0	0	1	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0038	3006	1	0	0	1	0	0	copy fasta	GPR83	chr11	94372316	94406419