JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR83_chr11_94372316_94406419	0/0	t0039	3006	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0040	3006	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0041	3006	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0042	3006	1	0	0	1	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0043	3005	1	0	1	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0044	3006	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0045	3006	1	0	0	1	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0046	3004	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0047	3003	1	0	1	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0048	3005	1	0	0	0	0	1	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0049	3006	1	0	1	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0050	3006	1	0	0	1	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0051	3006	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0052	3004	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0053	3006	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0054	3004	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0055	2999	1	0	0	1	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	t0056	3006	1	0	0	1	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR84_chr12_54357445_54369486	1/1	t0001	319	419	96	80	189	14	38	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	t0002	319	1	0	0	1	0	0	copy fasta	GPR84	chr12	54357445	54369486
GPR85_chr7_113077285_113091827	0/0	t0001	2119	72	4	15	49	0	4	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0002	2118	51	5	6	38	0	2	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	1/0	t0003	2119	26	3	2	8	1	11	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0004	2120	20	1	3	11	1	4	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/1	t0005	2119	14	1	7	0	3	2	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0006	2120	13	2	4	4	0	3	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0007	2116	11	5	3	1	1	1	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0008	2117	10	2	7	0	0	1	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0009	2117	8	4	0	4	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0010	2117	8	4	2	0	2	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0011	2120	5	1	0	3	0	1	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0012	2118	5	0	0	4	0	1	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0013	2118	5	0	0	2	1	2	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0014	2116	5	3	2	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0015	2119	4	1	1	1	0	1	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0016	2119	4	2	1	0	0	1	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0017	2115	4	4	0	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0018	2118	4	4	0	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0019	2122	4	4	0	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0020	2122	4	1	2	0	0	1	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0021	2119	3	0	1	2	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0022	2117	3	3	0	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0023	2116	3	0	3	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0024	2118	3	1	2	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0025	2117	3	0	2	0	0	1	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0026	2120	3	2	1	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0027	2116	3	3	0	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0028	2119	3	0	0	0	0	3	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0029	2123	3	2	0	1	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0030	2123	3	2	0	0	1	0	copy fasta	GPR85	chr7	113077285	113091827