Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
AMER2_chr13_25156679_25177288	0/0	t0024	8594	2	0	0	2	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0025	8595	2	0	0	2	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0026	8594	2	2	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0027	8596	2	0	0	0	2	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0028	8594	2	0	0	2	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0029	8596	2	0	2	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0030	8595	2	0	2	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0031	8594	2	0	0	1	1	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0032	8595	2	0	0	2	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0033	8596	2	1	0	1	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0034	8595	2	2	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0035	8594	2	0	0	2	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0036	8596	2	1	0	0	1	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0037	8594	2	2	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0038	8595	2	0	0	0	2	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0039	8595	1	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0040	8593	1	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0041	8594	1	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0042	8594	1	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0043	8595	1	0	1	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0044	8597	1	0	0	1	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0045	8598	1	0	0	0	1	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0046	8596	1	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0047	8596	1	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0048	8596	1	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0049	8596	1	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0050	8597	1	0	1	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0051	8597	1	0	0	1	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0052	8596	1	0	0	1	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0053	8597	1	0	0	1	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0054	8597	1	0	0	1	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0055	8596	1	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0056	8599	1	0	1	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0057	8597	1	0	0	1	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0058	8596	1	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0059	8596	1	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0060	8597	1	0	0	1	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0061	8598	1	0	1	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0062	8596	1	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0063	8597	1	0	0	0	1	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0064	8597	1	0	1	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0065	8596	1	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0066	8596	1	0	1	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0067	8596	1	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0068	8596	1	0	0	0	1	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0069	8596	1	0	0	0	1	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0070	8597	1	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0071	8596	1	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0072	8595	1	0	0	0	1	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0073	8595	1	0	0	1	0	copy fasta	AMER2	chr13	25156679	25177288